Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0204 ATGGCGGCCTCAAGATTCTCACTCTTCGGAACTTCAGTCCTCCGCCACCGCACCAACGTTTCTCCAATTCCTGCAATTCGACTCTCCTTTTCCCCATCTCGTTTCACTTGTTCCGCTGCGGTCGATACTGTCACTGCCGACAGCACAGACTCCCACCACCGCCATCCCTGGCCCGAATGGGTGACTTTCATCGACCGCTTGAAGACCAAAGGTTACTTTAGCGAAGCCCTTCCGGCCTCGGCCGACTACGACACTAATATGAACCTCTTCAAGGATGCTTGTCTCATCTTCGCTCGTGACCGCTTTGACGTTTTCAAATCATTGTCCAGAAAAGATATTCAAACTGTTGTGGAGGGTGGCTGCCCCAACCTTTTTCGAAAAGCTGTTAATTCAGCGAAAAGGTTGAGAGCATTTGTGCGATTAGATGAAGGAGATGTATGTAGTGCCTGCAATTTGCGAGGATCATGTGATAGAGCCTATGTGTTGCTAAAGGAATCTGAAGCAGCTGCCCGTACAGTAGATATTGTGCGTATTTTGTTGTTCTATGCTCTAGATCCACTTGTTACTTCAGGAGAGAAACCTCCTGGTAGAGAGCTTGTTGAGGTATCAGCAAGGAAACTGCTTTCAGAGTTGATTGAACTGAGCGACACACCTCTTGACCCAGCACTTGCAAAACCTGCTGCCATACCTCCACGTCGTAAGGAACAACATATGAATCTCACGGATGATGAAATGCCTCAAAATGTTCAAATGAAGAAAGGAGATTGGATCTGTCCTAACTGCAATTTCTTGAATTTTGCTAGAAATACACAATGCATGAAATGCCGTGAAGATGGCCCTAAAAGAGATAGTTTGAATGTGATTGAAATGAAGAAAGGAGATTGGACCTGTCCCGAATGTAACTTCATGAATTTTTCCAGAAATATACGATGCCTAAAGTGCAGAGCAGAAGGGCCTAAGAGGGTTGATGCAGCTGATATTCCAATGAAGAAAGGAGATTGGAATTGCCCACAGTGTGCGTTCATGAATTTTGCTAGCAAAACCGAGTGTTTCCGCTGCAGAGAGCCACGGCCCAAGAGACAGTTAAATCCTGGAGAATGGGAATGCCCCTCATGTGATTTCGTGAATTACAGAAGAAACACTGTCTGCCTGAAGTGCAATCGTGACCAGCCCAAAGAGGCAGCAACACCATATGAAGAGCATGTATGGAAGAAGCCTAGTAATCTTGGATAA 1233 0.459 MAASRFSLFGTSVLRHRTNVSPIPAIRLSFSPSRFTCSAAVDTVTADSTDSHHRHPWPEWVTFIDRLKTKGYFSEALPASADYDTNMNLFKDACLIFARDRFDVFKSLSRKDIQTVVEGGCPNLFRKAVNSAKRLRAFVRLDEGDVCSACNLRGSCDRAYVLLKESEAAARTVDIVRILLFYALDPLVTSGEKPPGRELVEVSARKLLSELIELSDTPLDPALAKPAAIPPRRKEQHMNLTDDEMPQNVQMKKGDWICPNCNFLNFARNTQCMKCREDGPKRDSLNVIEMKKGDWTCPECNFMNFSRNIRCLKCRAEGPKRVDAADIPMKKGDWNCPQCAFMNFASKTECFRCREPRPKRQLNPGEWECPSCDFVNYRRNTVCLKCNRDQPKEAATPYEEHVWKKPSNLG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0204 410 SUPERFAMILY Ran binding protein zinc finger-like 324 360 IPR036443 -
Vvi17g0204 410 ProSiteProfiles Zinc finger RanBP2 type profile. 291 320 IPR001876 -
Vvi17g0204 410 SUPERFAMILY Ran binding protein zinc finger-like 289 317 IPR036443 -
Vvi17g0204 410 ProSiteProfiles Zinc finger RanBP2 type profile. 330 359 IPR001876 -
Vvi17g0204 410 ProSitePatterns Zinc finger RanBP2-type signature. 367 386 IPR001876 -
Vvi17g0204 410 Pfam Zn-finger in Ran binding protein and others 291 319 IPR001876 -
Vvi17g0204 410 Pfam Zn-finger in Ran binding protein and others 330 358 IPR001876 -
Vvi17g0204 410 Pfam Zn-finger in Ran binding protein and others 252 275 IPR001876 -
Vvi17g0204 410 Pfam Zn-finger in Ran binding protein and others 365 386 IPR001876 -
Vvi17g0204 410 ProSitePatterns Zinc finger RanBP2-type signature. 334 353 IPR001876 -
Vvi17g0204 410 PANTHER ZINC FINGER PROTEIN 47 321 - -
Vvi17g0204 410 SMART zf_4 332 356 IPR001876 -
Vvi17g0204 410 SMART zf_4 365 389 IPR001876 -
Vvi17g0204 410 SMART zf_4 254 278 IPR001876 -
Vvi17g0204 410 SMART zf_4 293 317 IPR001876 -
Vvi17g0204 410 Gene3D - 284 320 - -
Vvi17g0204 410 Gene3D - 361 393 - -
Vvi17g0204 410 Gene3D - 321 360 - -
Vvi17g0204 410 Gene3D - 244 282 - -
Vvi17g0204 410 ProSiteProfiles Zinc finger RanBP2 type profile. 363 392 IPR001876 -
Vvi17g0204 410 SUPERFAMILY Ran binding protein zinc finger-like 360 392 IPR036443 -
Vvi17g0204 410 ProSiteProfiles Zinc finger RanBP2 type profile. 252 281 IPR001876 -
Vvi17g0204 410 SUPERFAMILY Ran binding protein zinc finger-like 247 279 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0204 Vvi-Chr17 1993769 2012308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0204 356 399 EF-hand Containing Proteins AT1G55040 41.176 5.75e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0204 - - vvi:100268018 862.448