Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0203 ATGGGTGGTGAGGACGACTATAGATTCATGGCCATAGAAGATGCCATGGCCTCACTCAACCAAAAAGTTAACATCATCGGCGTTGTAGTGGAAATGGGCATGCCTAAGCGGTCCAAAGGAACTGATTGTTTTTGTACTGTAAAGATAGTTGATCAATCACACAGGAGTTCTGGGATATCTGTTAATGTTTTTGCTGAAAATATGGAAAAGCTTCCACATGTCGAGTCAGCTGGAGATATTATTCAGTTTTCCCATGTAGTGATGAAGACTCATGGTCAGGATGTAAATGCTGTTTTCAACAAAAAATTCTCTTCATTTGCCATCTTTGAAGGGAAATATGGTGAAGATTTCAGTCCTTATCAAGTTTCTTCAAATTTCCGCCCTAGAGACCAGGACAAGAAGTTTGTAAAAGACTTGAGAAAATGGTTGGCTGATTCTGAAATTGATAAAGGGATGAAAGAACCCCTGTCGTTGAGAGAGATCAGGGAAGGAGAACGTGTTGATTTGTTTTGTAAGATTCTTCATATCTGTGAAGTCACTAAAGATGAGTGGATAATCTTTGTTTGGGATGGAACTGATACTCCTCCAGTTAGTGTCCAGACAGTGCTGGAAGATGAAATGGACAATCCACTTCCTTTACAATTGGAGTCTTTGCCTTTAAGTAGAGATATTTTGTGTACATTTCCTACTGTGGGAACTATATTAAGGGTGATTGTTGATCAAGGCAGTGAGAAGCTTAGCCTCCACTTACTAAAGGTTGGAAAGTGGGTGAGATTTCTCAAAATAATCTGTGAAGTGCAAGCAGGATTGTGGCGTGGTGTGTTGATGCCTTCAACAAAGCTTCGATATATGCCAGATGCTGACCTTCTTGTATCACAACGGCAAAGATTTTATGATGAGCGGCTGTCTTCAAAATGGGAGCGGATGCCATTGTCAAGCTTTCCTTGGCCTTCTCGTATCACAGAGACTGATTATGAGCATGTGCCAGTTGTTACATTGATGGATGTTGTCACCCATTCAGAGGTAACAGCTAAATTCAAGTGTGTAGTTCGAGTTGCAGCAATAGTTCCTTGGCGTGCAGAGGACTTCTGCTCTCCTCCTGGAACATATAGGACGAGGTTGACTCTGGAGGATCCAACTGCCAGAATCCATGCTTTTGTGCATGCTGAAGATGGGGAGAAGTTTTTTGAGGGTTATCCCCCAGTTGATGTGTTGAAAAGGAAACGAAACAAATTGCTGGGCATAGCTGAAAGCGATGACGGCAATGAAATCAATAATGCTCCCAGAAATCCACCATGGGTGCAGTGTTGCATTAAGTCGTATTACCTTGTAAAGGGTGATGTTTGGGGCAGTAGGAGGTATCGAATCTTTGGCACCAGGCTGGTAACGTAA 1392 0.4231 MGGEDDYRFMAIEDAMASLNQKVNIIGVVVEMGMPKRSKGTDCFCTVKIVDQSHRSSGISVNVFAENMEKLPHVESAGDIIQFSHVVMKTHGQDVNAVFNKKFSSFAIFEGKYGEDFSPYQVSSNFRPRDQDKKFVKDLRKWLADSEIDKGMKEPLSLREIREGERVDLFCKILHICEVTKDEWIIFVWDGTDTPPVSVQTVLEDEMDNPLPLQLESLPLSRDILCTFPTVGTILRVIVDQGSEKLSLHLLKVGKWVRFLKIICEVQAGLWRGVLMPSTKLRYMPDADLLVSQRQRFYDERLSSKWERMPLSSFPWPSRITETDYEHVPVVTLMDVVTHSEVTAKFKCVVRVAAIVPWRAEDFCSPPGTYRTRLTLEDPTARIHAFVHAEDGEKFFEGYPPVDVLKRKRNKLLGIAESDDGNEINNAPRNPPWVQCCIKSYYLVKGDVWGSRRYRIFGTRLVT* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0203 463 Pfam Telomeric single stranded DNA binding POT1/CDC13 12 143 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vvi17g0203 463 CDD hPOT1_OB1_like 7 144 - -
Vvi17g0203 463 Gene3D - 156 269 IPR012340 -
Vvi17g0203 463 SUPERFAMILY Nucleic acid-binding proteins 9 149 IPR012340 -
Vvi17g0203 463 Gene3D - 8 151 IPR012340 -
Vvi17g0203 463 FunFam Protection of telomeres 1b protein 157 289 - -
Vvi17g0203 463 FunFam Protection of telomeres 1 homolog 4 151 - -
Vvi17g0203 463 PANTHER PROTECTION OF TELOMERES 1 5 461 IPR028389 GO:0000723|GO:0043047
Vvi17g0203 463 SMART Telo_bind_a_2 9 144 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vvi17g0203 463 SUPERFAMILY Nucleic acid-binding proteins 157 262 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0203 - - vri:117905174 937.562