Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0201 ATGCGCAGGTTCTGCTACACTCTTCTCGTCGTACTTGCGCTCCTCCCTCTTTCTACACTCGCACGCCCATTCGTCCTCATCCTCACCCCCGACGACCTCAGTGACACCGCACCACCGTCCTCCGAATCCGCCGCGGACAGCGGCGACACGTCGGACTGGGATGAGTTCGGGGACTCCGACGCCAGGCTCGACGACGAGCTCGACCCGGGCTCCTGGCGCCCGATCTTGGAGCCGGATTCGGGTCCGGAACCAAAGACTGAGGATGAGGCGGTGTACTACTCCGGCGTGGCGAAGATGATCGCTGCTGCTAGCTCTGGCGGACCGAGGGTCATGGAGGAGGCGGCATCGGAGATTGAAGCGGCCGCGACAGCGGGGAACCCCCTTGCGCAGTCGGCGTTAGGGTTTTTGTATGAGACGGGCATGATGAGGGAGAGGAACAAAGCCAAGGCGTTTATGTATCATTACTTTGCTACCGATGGCGGTAACACGCAGTCTAAGATGGTTCTTGCCTACACTTACTCGCGCCAAGATATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGCTCCATAATGGAGCTGAAGAGAACAAAGAGGCCCTGAGGAAGTCTAGAGGGGAGGAAGATGAAGACTTCCAGATCTTGGAATACCAGGCTCAAAAAGGGAATGCAGCAGCTATGTATAAAATTGGGATATTTTACTACTTTGGATTGAGAGGATTGAGGCGTGATCGTGCCAAGGCATTGTTGTGGTTTCTAAAGGCTGTGGAGAAGGGGGAGCCAAGGTCCATGGAACTTCTTGGGGAGATTTACGCAAGGGGAGCTGGTGTTGAGAGGAACTACACTAAGGCGTTGGAATGGCTAACGCTCGCATCCCAACGACTCCCTTCAGCTTATAACGGGATGGGGTATTTATATGTGAAAGGTTACGGAGTGGAAAAGAAGAACTACACCAAAGCAAAAGAATACTTTGAGAAGGCTGTTGATCATGATGAGGCTGGTGGGCACTATAACCTAGGTGTAATGTATCTCAAAGGAGTTGGAGTAAAAAGGGATGTGAAGCTAGCTTGCAATTATTTTATAATGGCAGCTAAAGAAGGGCAGCCAAAGGCATTTTACCAGTTGGCAAAGATGTTCCATACTGGTGTGGGGCTTAAGAGGAATCTTCCTATGGCTACTGCATTATACAAACTAGTTGCAGAACGGGGACCATGGAGTTCCTTGTCTAGATGGGCACTGGAGTCATACCTAAAAGGTGATGTGGGGAAGGCGTTCCTCTTGTACTCTAGGATGGCTGAGCTAGGCTATGAGGTGGCACAAAGTAATGCTGCATGGATTCTTGACAAATATAGGGAACGTAGTATGTGCATAGGAGAATCTGGATTTTGTACAGATGCAGAAAGGCTTCAGCGGGCACATTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTGCTGATCGGGGATGCTTATTACTATGGTCGGGGTACTGAGAGAGATTATGATCGAGCTGCAAAGGCATACATGCATGCCAAGTCCCAATCCAATGCACAAGCCATGTTCAACCTTGGGTACATGCATGAGCATGGACAAGGACTTCCATTTGATCTTCATCTTGCAAAGCGTTACTATGATCAAGCCCTAGAGATTGATTCTGCTGCAAAATTGCCTGTTACATTGGCTCTTACGAGCTTGTGGATACGAAAGAACTATGCCAGCAGTTTCCTAGTTGACTTGGTCGATTCACTGCCTGAAGTCTATCCAAAAGTGGAAGCATGGGTGGAGAATGTGATCATGGAGGAAGGAAATGCAACAATTCTCACCCTTTTTGTCTGCCTACTGACAGTCCTTTACCTTCGTGAACGACAACGTAGGCATGTGGCTGCTGCTCCAGAGGCAGCCCTGCCACTCCTTCCCAATGAGCACGGTGTACTTGCTGCACCCCATTAA 2025 0.4958 MRRFCYTLLVVLALLPLSTLARPFVLILTPDDLSDTAPPSSESAADSGDTSDWDEFGDSDARLDDELDPGSWRPILEPDSGPEPKTEDEAVYYSGVAKMIAAASSGGPRVMEEAASEIEAAATAGNPLAQSALGFLYETGMMRERNKAKAFMYHYFATDGGNTQSKMVLAYTYSRQDMYDKAVELYAELAEIAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSRGEEDEDFQILEYQAQKGNAAAMYKIGIFYYFGLRGLRRDRAKALLWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKALEWLTLASQRLPSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAVDHDEAGGHYNLGVMYLKGVGVKRDVKLACNYFIMAAKEGQPKAFYQLAKMFHTGVGLKRNLPMATALYKLVAERGPWSSLSRWALESYLKGDVGKAFLLYSRMAELGYEVAQSNAAWILDKYRERSMCIGESGFCTDAERLQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTERDYDRAAKAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDSAAKLPVTLALTSLWIRKNYASSFLVDLVDSLPEVYPKVEAWVENVIMEEGNATILTLFVCLLTVLYLRERQRRHVAAAPEAALPLLPNEHGVLAAPH* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0201 674 SMART tpr_5 317 355 IPR019734 GO:0005515
Vvi17g0201 674 SMART tpr_5 163 196 IPR019734 GO:0005515
Vvi17g0201 674 SMART tpr_5 542 579 IPR019734 GO:0005515
Vvi17g0201 674 SUPERFAMILY HCP-like 226 335 - -
Vvi17g0201 674 SUPERFAMILY HCP-like 108 194 - -
Vvi17g0201 674 Gene3D Tetratricopeptide repeat domain 433 590 IPR011990 GO:0005515
Vvi17g0201 674 Gene3D Tetratricopeptide repeat domain 87 202 IPR011990 GO:0005515
Vvi17g0201 674 Gene3D Tetratricopeptide repeat domain 314 432 IPR011990 GO:0005515
Vvi17g0201 674 MobiDBLite consensus disorder prediction 31 87 - -
Vvi17g0201 674 Pfam Sel1 repeat 508 530 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 283 313 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 542 574 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 439 457 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 357 388 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 128 161 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 245 280 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 394 424 IPR006597 -
Vvi17g0201 674 Pfam Sel1 repeat 317 352 IPR006597 -
Vvi17g0201 674 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 6 657 IPR044623 GO:0030433
Vvi17g0201 674 SMART sel1 282 316 IPR006597 -
Vvi17g0201 674 SMART sel1 354 389 IPR006597 -
Vvi17g0201 674 SMART sel1 390 425 IPR006597 -
Vvi17g0201 674 SMART sel1 245 281 IPR006597 -
Vvi17g0201 674 SMART sel1 127 162 IPR006597 -
Vvi17g0201 674 SMART sel1 317 353 IPR006597 -
Vvi17g0201 674 SMART sel1 506 541 IPR006597 -
Vvi17g0201 674 SMART sel1 542 577 IPR006597 -
Vvi17g0201 674 Gene3D Tetratricopeptide repeat domain 207 313 IPR011990 GO:0005515
Vvi17g0201 674 SUPERFAMILY HCP-like 437 577 - -
Vvi17g0201 674 SUPERFAMILY HCP-like 335 465 - -
Vvi17g0201 674 MobiDBLite consensus disorder prediction 48 62 - -
Vvi17g0201 674 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 210 321 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0201 K14026 - vvi:100256050 1333.16