Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0197 | ATGGCTATGTATATACGTGTTAAACGCAGTAAGACAACCTACTTTCTACAGTGTGATCCAACTGAGACAATTCTAGATGTTAAGCAGAAATTGCATACCCTCATTGATCAACCAATCAATGATCAGCGTTTGATCTTAGTAGGAACTGGGGAAATATTAGATGATTCCAAAACGTTGGCAGATCAGAAGGTCGAAAATGATGCTGTTGTGGCACTGACATTGAGAAAAGATGACAATGAATTTGAGGATGTCAACATCGTGCGGCCAAATGATGATTTCTATCAGTCTCGTGATCCAGATGGCAGTTGGTAA | 312 | 0.3974 | MAMYIRVKRSKTTYFLQCDPTETILDVKQKLHTLIDQPINDQRLILVGTGEILDDSKTLADQKVENDAVVALTLRKDDNEFEDVNIVRPNDDFYQSRDPDGSW* | 104 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0197 | 103 | SMART | ubq_7 | 3 | 75 | IPR000626 | GO:0005515 | |
| Vvi17g0197 | 103 | Gene3D | - | 1 | 91 | - | - | |
| Vvi17g0197 | 103 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 79 | IPR000626 | GO:0005515 | |
| Vvi17g0197 | 103 | PANTHER | OS03G0364000 PROTEIN | 1 | 101 | - | - | |
| Vvi17g0197 | 103 | SUPERFAMILY | Ubiquitin-like | 1 | 79 | IPR029071 | - | |
| Vvi17g0197 | 103 | CDD | Ubl_ubiquitin_like | 5 | 72 | - | - | |
| Vvi17g0197 | 103 | Pfam | Ubiquitin family | 5 | 76 | IPR000626 | GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0197 | K03873 | - | vvi:100244093 | 210.69 |