Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0195 ATGGAGAATACTAGCGGGTCTCACACAACCGCTGCTCCACCTCTTTCAAAACAGAATCCTCGAGGTTTCCAGAGAAAGGAGGAGAGAGAGAGTGAGACTGAGAGAGAAGCCATGGACGATGCAAAGATCTCAGAGCTGAAACAGTTCGTGAACAGTGTTAAATCAGATCCTTCTATTCTCTACAATCCATCTCTATCCTTCTTCAAATCATATCTCCAGAGTCTAGGGGCTAGAATTCCGGAAAAACCAGATAAATGTGGTTGTGGCACTTCAGACCATGGGGAACATGTTGATGCCAAAAAAACAAATCTATGTAGTGAAGATGACAAGTTTGAGGATGATATTGTTGAGTCTGATATTGAATTGGATGACACTGATGTTGTGGAGCCTGATAATGATCCTCCACAAAAGATGGGAGATCTGTCAATTGATGTAACCGAAGAAAATCAGGATGCTGCACAAATGTTGAAATCAAAAGCCATGGAGGCCATTTCTGAAGGAAAGCTAGATGAAGCAACAGATAATCTAACAGAAGCCATCATGTTGAATCCAAGTTCAGCAATATTATATGCAACTAGAGCTAGTGTCTATGTTAAGCTGAAGAAACCAAATGCTGCAATCCGTGATGCTGATGCAGCTTTAAAGATCAACCCTGACTCTGCAAAAGGATATAAAATACGAGGAATGGCGAGGGCCATGTTGGGCCTGTGGGAAGAAGCAGCAACTGATTTGCATGTGGCATCAAGGCTAGATCACGATGAGGAGATTGCTTTGGTTCTTAAAAAGGTTGAACCTAATGCACACAAGATTGAGGAGCATCGCAGAAAATATGCACGGTTGTGCAAAGAGAGGGAGCTAAGAAAATCTGGGCATCAGAAGCAACAGCAGCAAGCTCAACCCCATGATTCAGAAGCTGCAGCTGCTTTTAAGGATGGCCAAGTAATGGCAATTCATTCTTCTTCTGAACTGGAAACTAAGTTAAAAGCTGCTTCGAAGACGTCTCGCTTGGCAATCCTGTATTTCACTGCAACATGGTGTGGGCCTTGTCGTTATATTTCTCCCGTCTTTACAAGCCTATCAGGAAAGTACCCAAAAGTTGTTTTCTTGAAAGTTGACATAGATGGTGCCCAGGATGTGGCTGTAAGCTGGAATGTTAGCAGTGTTCCAACTTTCTTCTTCATAAAAAATGGCAAGGAGATTGATAAAGTGGTAGGGGTTGACAAAAGTGCACTTGAAACAAAGATTGCACAATATGCAGGCCAATCTTAA 1269 0.4247 MENTSGSHTTAAPPLSKQNPRGFQRKEERESETEREAMDDAKISELKQFVNSVKSDPSILYNPSLSFFKSYLQSLGARIPEKPDKCGCGTSDHGEHVDAKKTNLCSEDDKFEDDIVESDIELDDTDVVEPDNDPPQKMGDLSIDVTEENQDAAQMLKSKAMEAISEGKLDEATDNLTEAIMLNPSSAILYATRASVYVKLKKPNAAIRDADAALKINPDSAKGYKIRGMARAMLGLWEEAATDLHVASRLDHDEEIALVLKKVEPNAHKIEEHRRKYARLCKERELRKSGHQKQQQQAQPHDSEAAAAFKDGQVMAIHSSSELETKLKAASKTSRLAILYFTATWCGPCRYISPVFTSLSGKYPKVVFLKVDIDGAQDVAVSWNVSSVPTFFFIKNGKEIDKVVGVDKSALETKIAQYAGQS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0195 422 ProSiteProfiles TPR repeat profile. 153 186 IPR019734 GO:0005515
Vvi17g0195 422 MobiDBLite consensus disorder prediction 1 17 - -
Vvi17g0195 422 Gene3D Glutaredoxin 290 421 - -
Vvi17g0195 422 CDD TRX_family 327 416 - -
Vvi17g0195 422 Pfam Thioredoxin 331 416 IPR013766 -
Vvi17g0195 422 SUPERFAMILY Thioredoxin-like 276 420 IPR036249 -
Vvi17g0195 422 Gene3D - 36 80 - -
Vvi17g0195 422 FunFam TPR repeat-containing thioredoxin TDX 289 421 - -
Vvi17g0195 422 MobiDBLite consensus disorder prediction 1 41 - -
Vvi17g0195 422 Pfam Hsp70-interacting protein N N-terminal domain 39 80 IPR034649 GO:0046983
Vvi17g0195 422 MobiDBLite consensus disorder prediction 285 304 - -
Vvi17g0195 422 SMART tpr_5 153 186 IPR019734 GO:0005515
Vvi17g0195 422 SMART tpr_5 187 220 IPR019734 GO:0005515
Vvi17g0195 422 SMART tpr_5 221 254 IPR019734 GO:0005515
Vvi17g0195 422 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Vvi17g0195 422 FunFam FAM10 family protein 114 287 - -
Vvi17g0195 422 PANTHER HSC70-INTERACTING PROTEIN 38 420 - -
Vvi17g0195 422 FunFam Hsc70-interacting protein-like protein 38 80 - -
Vvi17g0195 422 CDD Hip_N 40 80 IPR034649 GO:0046983
Vvi17g0195 422 MobiDBLite consensus disorder prediction 21 41 - -
Vvi17g0195 422 ProSiteProfiles Thioredoxin domain profile. 295 420 IPR013766 -
Vvi17g0195 422 ProSitePatterns Thioredoxin family active site. 338 356 IPR017937 -
Vvi17g0195 422 SUPERFAMILY TPR-like 146 261 IPR011990 GO:0005515
Vvi17g0195 422 Gene3D Tetratricopeptide repeat domain 114 287 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0195 Vvi-Chr17 1833242 1853582 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0195 K09560 - vvi:100268081 815.839