Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0192 ATGGCGATCGTGACGGGAGATAGGTACCTGGAATCGCTGGTGAAGTTCGTGGAGAAGCAGGCGGGGCCGTTGATCGAAGGGAGTGTGGTGCTGAAACTCAACCCCGTGGGCCTTCACTATGTGCAGTCGAGGCTCGAGGCGCTTCATGAGTTGGAGAGTCTTCTCGCCGGTGCCCCGGTTGATTATCTCCGGGCCTACATCTCCGACCTAGGCGACCACCGAGCGCTCGAGCAGCTTCGGCGGATTCTGCGCCTGCTGACCTCGCTGAAGGTCGTGTCAGTGCTTCCGCCGTCGGTGAGGGATCCGACGAGGCTGTCGTTGTTGCCGTTTGGGCGGTTGAGGGTTTTGGAGCTCCGCGGGTGCGATCTATCCACTTCTGCTGCTAGGGGGCTTCTTGAATTGAGGCACACGTTGGAGAAGATCATTTGCCATAATTCTACTGATGCTCTTCGGCATTTGTTTGCAAGTAGAATTGTGGCAATAAAGGACTCACCACAGTGGAAACGATTGTCATTTGTTTCATGTGCTTGTAATGGCTTGCTTCTCATGGATGAGTCTTTGCAACTTCTTCCTGCTGTTGAAACTCTTGATCTAAGCAGAAACAAGTTTTCAAAGGTTGATAATCTACGGAAGTGTACAAAATTGAAGCACCTGGATCTTGGGTTCAATCACCTGAGAACAATATCATCATTTAGTGAGGTCTCTTGTCATATTGTTAAACTTGTTATGAGGAACAATGCTCTAACTACGTTGCGTGGGATTGAGAATTTGAAGTCACTTGAAGACCTTGATCTTTCCTACAATGTTATTTCCAATTTTTCAGAGATTGAGATCCTTGCTGGCCTTCCATCTCTACGGCGCTTGTGGTTAGAAGGAAATCCAATATGTTGTGCCAGATGGTATCGAGCACAAGTATTCAGTTTTTTTGCTCATCCAGATAAAGTGAAATTAGATGAAATGGAAATCAGCACAAGAGAGTTTTGGAAGAGGCAAATTATTATTGCCAGTAGGCAGAAACGGCCTGCTAGCTTTGGATTCTATTATCCTGCGAGAGAGGATGCTGGAGAAGGGGGTATAAGCACAAAAAGGAAAAAGCTATCTCGACTTGCTTGTATTGAGACTGAGGGGAGCATGTATATATGCTCTGACCAAGATTCAGTGTCATGTGATAATGAGGTCAGAAGTAAAGAGGATAATGCCATTTCTGATGATGAAGCCGAAATAGTTGATTTGATGAAAAGAGTTGAGCTCATGAAGAAGGAGCGTTCCGTTCTTTGGTTGCGGGAGTTTAAGGAGTGGATGGATCTGGCTTCTGACAGTTTTGCAGAAGGCAATAAATATGGGTCTGTCTTGGATTCTGGTACAGAAAATTATATGAGAAAGAAGGCTGGTCAAAGGCATCTTGGTGAAAGCTCAAGATATGTCTCAGACTCTGTTCAAGCTTCAGGGGATGAAAGTGGCACGGACATATTGGAATCTAATAACTCCTTTGCAGATATCTCCATAGGTTTGGTTCCTCAATACGTTGATCGTAGTGGTGAATCAGGTTCTATGTTTGCATTGAGGGACACTGGTGTGGATGCTATACAGGATCAGTCAAAATCTTATTCACATGAAGGGATTAATTGTGTGCCTGTGAAAGCTAAAGACTCACATCTTAATGCCCTTACCGCTCAAGGTAGTAATAGGATGGTTCCAGATGTCAGTGTCACACCATTGACTGTGATTGATGATATCGTGGAGTCTCATTTGTCCTCTGATTGCCCTGGATCACCTCCGCATTATCAAGAGGACCTTCTGCATCGCCGCCACATCTTAGTTGAAGATATTTTGCAGCTATCTGCTGAATCCTATTCAGTGGCATCATCTGATAGCAATACAAGTGACAGCAATGATCTCTGTGAAGTTGAATCATCCGTATCTGAAGTTGAGCAATCAGTAAATGAAGAAATTTCCAATAGGAGTGTGGGGCACTCGTTGACCACTTTTTTTGGTAACATTTATTATGAACAAAGACACCAAATTCCACTGGTAAGAGAAAATGGGAGATATTTATTAGATTCACATGCTGGACAAGCCTCTGCCACTCTGAAACTTTTAAAACCGGAGCAATCTCTGCAATTGTGCAGTAATGATTTTTGTGCTGGTGCTCATGATGGTGAAATTGCTAGTCTTTCAAACGAAGAAGCTGATTGGTTGGACAAGAAAAAGTGCAAAAGGAAGCCAAGAAAAATTGTTTCAGTATCACAGAATAATATGGTTGGGAGGGCAGAAGACTCACAAACATTAGTTGGCAATCCAGATTTTTGTGGAGGTGATATGGAAGATGAACAAGGAGAACAGATTTTTGGTTGGAATTTTTGGGACGGATTTGTTGATGGGGAACAGACTTGTGCAAGTGCAACTATAACCCCACTTATTGATGATGCTGGTAGAATCCTTTCGGGATTGAGAGGGCCAACTACTGGGGCTGATGATTTCATTAAGAACTATTTCAATTTAAACATTGCGGATTCAAGTGTTAATGAAACTTGTAAGCAGTATATGCGGTCTAGTTGTTTTCTTGAGCTGGAATCCAGGTACACAGAAAGAGAAGTGGCTATACTACTGAGCAGTGAACACAAGTTGTATGTACTACTCGTTGATGTCACGTTTGATGGGTCAGGAACCATCTTAAAACTTTTGGGTTGCCACAGGCTTGAAGATGTTAGAGAGGTTTTGGTTGGTGTAGGACTTCAGGTTGTGAGGGTGTATATTGAGAGGGATGCAGCATATATGTTTCTAACAAGGAGTATGGAGAAATCAAGGCAATTACTGTGTACCTTGCAAGTTGTTGATTCAAATGAAACATGCAGCAAATGTTCTTTGAGGAGTTTGGAGCAGGTTCAGGTGGAATTGTTTGAGAAACATATATGTGGAGGTTCAAAAATAAGCATATTCCAATATTCTTTGGTGCTTTTCTGGCGCAATAATATTGAAGATGAATTATGGCTTTCAAGGTCACTATTTGTAATTGGAGGACATTTGCTTGTGTGCATTGAAGACTTCATGCAATTTAGCGCTCTTTCAATAGATGCATCTTCATCAACATATTTCTCCCTTGATTCATGCTGCTCCATCACTGATGTATCTGAAATGGTGATTGAGGCGAGGGAGAGTCAGTGTGTTACCTTGGCTCTTGTACGAGCCACGTCAGAGTTGTGCCCATCAACCAACACAGACAAGGAGCAGGTGGGACTTGATAAAGAAAAGACAGCTTCGGGGTCTCTGACATGGAAGCTCAAGTGGTTCTCAGAAGAGAGTCTATTCAAGTTTGTGGCACTCTTTAAGGCAATCCATGCAGGAGCCACCATGTCCCCTTTACCAGTAAGATGTATATCATAA 3384 0.4326 MAIVTGDRYLESLVKFVEKQAGPLIEGSVVLKLNPVGLHYVQSRLEALHELESLLAGAPVDYLRAYISDLGDHRALEQLRRILRLLTSLKVVSVLPPSVRDPTRLSLLPFGRLRVLELRGCDLSTSAARGLLELRHTLEKIICHNSTDALRHLFASRIVAIKDSPQWKRLSFVSCACNGLLLMDESLQLLPAVETLDLSRNKFSKVDNLRKCTKLKHLDLGFNHLRTISSFSEVSCHIVKLVMRNNALTTLRGIENLKSLEDLDLSYNVISNFSEIEILAGLPSLRRLWLEGNPICCARWYRAQVFSFFAHPDKVKLDEMEISTREFWKRQIIIASRQKRPASFGFYYPAREDAGEGGISTKRKKLSRLACIETEGSMYICSDQDSVSCDNEVRSKEDNAISDDEAEIVDLMKRVELMKKERSVLWLREFKEWMDLASDSFAEGNKYGSVLDSGTENYMRKKAGQRHLGESSRYVSDSVQASGDESGTDILESNNSFADISIGLVPQYVDRSGESGSMFALRDTGVDAIQDQSKSYSHEGINCVPVKAKDSHLNALTAQGSNRMVPDVSVTPLTVIDDIVESHLSSDCPGSPPHYQEDLLHRRHILVEDILQLSAESYSVASSDSNTSDSNDLCEVESSVSEVEQSVNEEISNRSVGHSLTTFFGNIYYEQRHQIPLVRENGRYLLDSHAGQASATLKLLKPEQSLQLCSNDFCAGAHDGEIASLSNEEADWLDKKKCKRKPRKIVSVSQNNMVGRAEDSQTLVGNPDFCGGDMEDEQGEQIFGWNFWDGFVDGEQTCASATITPLIDDAGRILSGLRGPTTGADDFIKNYFNLNIADSSVNETCKQYMRSSCFLELESRYTEREVAILLSSEHKLYVLLVDVTFDGSGTILKLLGCHRLEDVREVLVGVGLQVVRVYIERDAAYMFLTRSMEKSRQLLCTLQVVDSNETCSKCSLRSLEQVQVELFEKHICGGSKISIFQYSLVLFWRNNIEDELWLSRSLFVIGGHLLVCIEDFMQFSALSIDASSSTYFSLDSCCSITDVSEMVIEARESQCVTLALVRATSELCPSTNTDKEQVGLDKEKTASGSLTWKLKWFSEESLFKFVALFKAIHAGATMSPLPVRCIS* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0192 1127 SUPERFAMILY L domain-like 176 324 - -
Vvi17g0192 1127 ProSiteProfiles Leucine-rich repeat profile. 214 235 IPR001611 GO:0005515
Vvi17g0192 1127 PANTHER NISCHARIN RELATED 1 644 - -
Vvi17g0192 1127 FunFam Uncharacterized protein 235 326 - -
Vvi17g0192 1127 Pfam Leucine rich repeat 239 295 IPR001611 GO:0005515
Vvi17g0192 1127 MobiDBLite consensus disorder prediction 462 486 - -
Vvi17g0192 1127 FunFam Outer arm dynein light chain 1 71 234 - -
Vvi17g0192 1127 Pfam Leucine Rich repeats (2 copies) 193 231 IPR025875 -
Vvi17g0192 1127 MobiDBLite consensus disorder prediction 471 486 - -
Vvi17g0192 1127 SMART LRR_sd22_2 190 211 - -
Vvi17g0192 1127 SMART LRR_sd22_2 257 278 - -
Vvi17g0192 1127 SMART LRR_sd22_2 212 233 - -
Vvi17g0192 1127 ProSiteProfiles Leucine-rich repeat profile. 259 280 IPR001611 GO:0005515
Vvi17g0192 1127 Coils Coil 401 421 - -
Vvi17g0192 1127 SMART LRR_typ_2 213 235 IPR003591 -
Vvi17g0192 1127 SMART LRR_typ_2 190 212 IPR003591 -
Vvi17g0192 1127 SMART LRR_typ_2 282 308 IPR003591 -
Vvi17g0192 1127 SMART LRR_typ_2 257 281 IPR003591 -
Vvi17g0192 1127 Gene3D Ribonuclease Inhibitor 161 331 IPR032675 -
Vvi17g0192 1127 ProSiteProfiles Leucine-rich repeat profile. 192 213 IPR001611 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0192 - - vvi:100250985 2156.72