Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0189 ATGTCAGATTCTTTGAATGGAAAAGTCATGATCACTTCCTCAGGAAGGTCAGACGCTATTGCAAGGGCACAGCCTATCCTCTCTGCAATGTGTGAAAAGCTTTACATTTTTGAGGGTGAAGTGGGTGCTGGAAGTAAAATTAAAATGGTTAATGGGCTGCTGGAGGGCATTCATCTTGTTGCTTCTGCAGAGGCCATTGCTCTTGGTGTGCAGGCTGGGATTCATCCATGGATTATCTATGATATCATTGCTAATGCGGCTGGAAATTCATGGGTTTTCAAGAATCATGTTCCCCAATTGTTAAGGGGTAATCTTACCAAACAACATTTCCTGAATACTGCTGTCCAAAATGTGGGGAGCATATTGGATATGGCTAAATCACTTCCATTTCCTCTTCCACTTTTGGCGGTTGCTCATCAACAACTTATTTCTGGTTCTTCATATGGTCATGGACATAATGATGCCACTTTGGTCAAGGTTTGGGAAAAAGTATTTGGAGTGAATCTCACTGCTGCAGCCAATGCAGAAATCTACAGCCCTCTGGAACTGGGAAGTCAAATTACAGCCAAACCAAAGACTGTGAAACGTGTTGGTTTCATTGGTCTCGGAGCAATGGGGTTTGGGATGGCAACAAGCCTTCTAAAATCAAACTTCTGTGTTCTTGGTTTTGATGTATATAAGCCAACACTATCTCGATTTGCCAATGCTGGTGGGTTAGTTGGGGAGTCTCCAGCAGAAGTATCCAAAGATGTAGATGTGCTTGTAATCATGGTCACAAATGAAGCTCAAGCTGAAAGTGTTCTATTTGGAGATCTTGGTGCAGTAAAAGTCCTTCCACCTGGGGCATCTATTATCCTTTCATCCACTGTTTCTCCGGGATTTGTGATCCAGCTTGAGCGCCGATTGAAAAATGAAAACAAGAATTTGAAATTGGTGGATGCTCCTGTTTCTGGTGGTGTCAAGAGGGCCTCCATGGGAACCCTTACGATAATTGCTTCAGGAACAGATGAAGCTCTTACATCTGCTGGTTCAGTTCTATCAGCACTAAGTGAGAAACTCTACATTATCAGGGGAGGTTGTGGGTCTGGAAGTGCTGTAAAGATGGTCAATCAACTGCTGGCGGGAGTGCATATAGCAGCATCAGCTGAGGCAATGGCAATTGGTGCTCGATTGGGTCTTAATACAAGAAAGTTGTTCGATTTCATCACAAATAGTGGGGGAACATCTTGGATGTTTGAGAATCGTACTCCTCACATGCTGAATAATGACTATACACCATGCTCTGCCCTGGATATCTTTGTGAAGGATTTGGGCATTGTTTCTCATGAGTGCTCATCCTATAAAGTTCCACTTCTTCTTTCTACTGTTGCACACCAACTTTTCCTGTCAGGTTCTGCTGCTGGTTGGGGTCGGTATGATGACGCTGCTGTGGTTAAGGTCTACGAAACTCTAACTGGTGTTAAAGTTGAAGGCAAGCTTCCTGTTGTTAAGAAAGAAGAAGTTCTCCATTCTCTTCCACCTGAATGGCCATCAGATCCCATTGATGACATACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGGAACGTCGAACCTCTTGTTGAACAATTCAGAAAAAGGCCCAAATGCTTCTTCATTTTGACTAATTCCCGGGCATTGACTCCAGAGAAGGCCACTGCATTGATTAAAGATATCTGCACAAACATACGTAATGCAGCGAACTCAGTGGGTAATATTGATTATACTGTTGTTCTAAGAGGAGATTCAACATTACGGGGTCATTTTCCAGAGGAAGCAAATGCAGCAGTTTCAGTGCTGGGTGAGATGGATGCATGGATCATATGTCCATTTTTCCTGCAAGGAGGCCGGTATACTATTGATGACATACACTATGTTGCAGATTCTGACCGTCTTGTTCCTGCAGGGGACACAGAGTTTGCTAAAGATGCTTCTTTTGGCTATAAATCTTCAAACCTCCGTGAGTGGGTAGAGGAGAAAACAATAGGTCGCATACCAGCCAGCAGTGTTACGTCTATTTCTATCCAACTTTTAAGGAAAGGTGGACCTGATGCTGTTTGCATGCATCTTTGTTCTTTGCAAAAGGGTTCAACATGTATAGTTAATGCAGCTAGTGAAAGAGACATGGCTGTATTTGCAGCTGGAATGATCCAGGCAGAAAGGAAGGGAAAGCATTTCTTATGCCGCACTGCTGCTAGTTTTGTTTCAGCTCGGATTGGCATTATCCCGAAAGCTCCAATTTTGCCAAAAGATCTAGGAATAAACAAAGAAAGGAACGGTGGACTCATAGTTGTGGGGTCATATGTTCCAAAAACAACAAAACAGGTTGAAGAGCTTAAATTACAATGCGGTCAGATCTTACGAAGCATTGAGATATCTGTTGATAAACTTGCCATGAAGTCATCAGAAGAGAGGGAGGAAGAAATCAGTCGAGCTGCAGAGATGGCAGATGTTTTCCTCAGGGCTTCTAAAGACACTCTAATAATGACCAGTCGAGAGCTCATTACAGGAAAATCTCCTTCTGAGAGTTTGGAGATCAATTTCAAAGTGAGCTCTGCACTGGTGGAAATTGTTAGGCGGATAACTACAAGACCTCGATATATCCTTGCAAAGGGTGGAATCACATCATCTGACCTTGCTACAAAAGCTCTAGAAGCAAGACGTGCTAAAGTAGTTGGGCAAGCCCTTGCTGGTGTTCCCTTGTGGCAGCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTCGTCCTTTTAGACTTTCATCAACAAAGGGGCTTCTTCTTGATGCAGAAAGGGGTGGATATGCTGTTGGAGCATTCAATGTTTATAATCTGGAAGGAGTTGAGGCAGTTGTTGCTGCTGCAGAGGAAGAACAAAGTCCTGCCATTTTACAGATCCATCCTAGTGCTTTAAAACAAGGAGGAATTCCCTTGGTCGCATGTTGTATTGCTGCTGCTGCACAAGCTAGTGTTCCCATTACTGTTCACTTTGATCATGGAAGTTCCAAGAGAGAGCTGGTGGATGTTCTTGAGTTGGGATTTGATTCAGTTATGGTAGATGGTTCTCATCTTCCCTTCAAGGACAATATCTCATACACAAAATACATATCACTCTTGGCGCACTCAAAAGATATGATGGTGGAAGCTGAATTAGGAAGATTATCAGGAACTGAAGATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCGGAAATGTCCATGGAAAATACCCTGCAACTGGCCCAAATCTCAGACTTGATTTACTTAAGGAACTGCACAATTTGTGCTCAAAGAAAGGAGTTCTTCTAGTTCTTCATGGAGCTTCTGGGTTGTCAGAGAAACTCATCAAGGAATGCATAGAACGAGGCGTGACAAAGTTCAATGTGAACACAGAGGTGCGAAAGGCTTACATGGAGTCACTGAGCAGCCCTGGGAAAGACTTAGTACATGTTATGTCAAATGCAAAGGAAGCCATGAAAGCTGTGGTTGCAGAGAAGATGCATCTGTTTGGTTCAGCTGGGAAAGCATGA 3744 0.4306 MSDSLNGKVMITSSGRSDAIARAQPILSAMCEKLYIFEGEVGAGSKIKMVNGLLEGIHLVASAEAIALGVQAGIHPWIIYDIIANAAGNSWVFKNHVPQLLRGNLTKQHFLNTAVQNVGSILDMAKSLPFPLPLLAVAHQQLISGSSYGHGHNDATLVKVWEKVFGVNLTAAANAEIYSPLELGSQITAKPKTVKRVGFIGLGAMGFGMATSLLKSNFCVLGFDVYKPTLSRFANAGGLVGESPAEVSKDVDVLVIMVTNEAQAESVLFGDLGAVKVLPPGASIILSSTVSPGFVIQLERRLKNENKNLKLVDAPVSGGVKRASMGTLTIIASGTDEALTSAGSVLSALSEKLYIIRGGCGSGSAVKMVNQLLAGVHIAASAEAMAIGARLGLNTRKLFDFITNSGGTSWMFENRTPHMLNNDYTPCSALDIFVKDLGIVSHECSSYKVPLLLSTVAHQLFLSGSAAGWGRYDDAAVVKVYETLTGVKVEGKLPVVKKEEVLHSLPPEWPSDPIDDIRTLDQSNLKTLIVLDDDPTGTQTVHDIEVLTEWNVEPLVEQFRKRPKCFFILTNSRALTPEKATALIKDICTNIRNAANSVGNIDYTVVLRGDSTLRGHFPEEANAAVSVLGEMDAWIICPFFLQGGRYTIDDIHYVADSDRLVPAGDTEFAKDASFGYKSSNLREWVEEKTIGRIPASSVTSISIQLLRKGGPDAVCMHLCSLQKGSTCIVNAASERDMAVFAAGMIQAERKGKHFLCRTAASFVSARIGIIPKAPILPKDLGINKERNGGLIVVGSYVPKTTKQVEELKLQCGQILRSIEISVDKLAMKSSEEREEEISRAAEMADVFLRASKDTLIMTSRELITGKSPSESLEINFKVSSALVEIVRRITTRPRYILAKGGITSSDLATKALEARRAKVVGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDSKALADVVKSWVRPFRLSSTKGLLLDAERGGYAVGAFNVYNLEGVEAVVAAAEEEQSPAILQIHPSALKQGGIPLVACCIAAAAQASVPITVHFDHGSSKRELVDVLELGFDSVMVDGSHLPFKDNISYTKYISLLAHSKDMMVEAELGRLSGTEDDLTVEDYEAKLTDVDQALEFIDETGIDALAVCIGNVHGKYPATGPNLRLDLLKELHNLCSKKGVLLVLHGASGLSEKLIKECIERGVTKFNVNTEVRKAYMESLSSPGKDLVHVMSNAKEAMKAVVAEKMHLFGSAGKA* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0189 1247 CDD TBP_aldolase_IIB 972 1245 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vvi17g0189 1247 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 361 488 IPR008927 -
Vvi17g0189 1247 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 40 166 IPR008927 -
Vvi17g0189 1247 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 189 491 - -
Vvi17g0189 1247 Pfam Nucleotide-binding C-terminal domain 790 956 IPR031475 -
Vvi17g0189 1247 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 196 354 IPR006115 GO:0050661
Vvi17g0189 1247 Pfam Fructose-bisphosphate aldolase class-II 971 1246 IPR000771 GO:0005975|GO:0008270|GO:0016832
Vvi17g0189 1247 SUPERFAMILY YgbK-like 528 960 - -
Vvi17g0189 1247 Gene3D - 527 766 IPR037051 -
Vvi17g0189 1247 Pfam Sugar-binding N-terminal domain 528 765 IPR010737 -
Vvi17g0189 1247 Gene3D - 780 962 IPR042213 -
Vvi17g0189 1247 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 195 353 IPR036291 -
Vvi17g0189 1247 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 199 212 IPR002204 GO:0016491
Vvi17g0189 1247 Gene3D Aldolase class I 963 1247 IPR013785 -
Vvi17g0189 1247 SUPERFAMILY Aldolase 971 1247 - -
Vvi17g0189 1247 Gene3D - 358 490 IPR013328 GO:0016491
Vvi17g0189 1247 Gene3D - 39 169 IPR013328 GO:0016491
Vvi17g0189 1247 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 361 481 IPR029154 GO:0051287
Vvi17g0189 1247 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 42 158 IPR029154 GO:0051287
Vvi17g0189 1247 Gene3D - 190 357 - -
Vvi17g0189 1247 NCBIfam ketose-bisphosphate aldolase 969 1247 IPR000771 GO:0005975|GO:0008270|GO:0016832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0189 - - vvi:100262718 2385.53