Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0185 ATGGCTCTGCGTTTGATCCTCCTCCTGCAAATTGCAGTACTGGTATGGGCGATGGAAGCTGCCGCTGAACTAGCCCTTCCGGGCTGTGCCAGCCACTGCGGCAATATCAGCATCCCATATCCATCTGGGACTACCCCAGAATGCTATCTAAACCAAGATTTCTTCATCAATTGCAGCTCCACCCATCAAGCTTTTTCGACGGACAGTGACATAGATGCTCTATCGATTTCAGTTTCGGGTCAATTGCGAGTCCTTTCGTATGTGGCTCGAGACTGTTACAACAAATCCGGGCAAAGAGCCGCCAACAACGATCCATGGATGACACTGGCGAAGTTCCCCATCTCCCATACTCGGAACAAGTCCTGCTCGGGGATCGGCTGTTGCCAGACCACAATCCCAGCAAATGTAAGGAGCTATGAGATCAGTGTGGAAAGCTACAACAACCATAGAGAAGTATGGGCTTTTAATCCATCCAGCTTCGTCTTTGTGGCTGAAGATGGCGCTTTCAGCTTCTCCTCCACTGACCTCCTTGATTTACAGAAGAAAACCAGGGTTCCTACAGTGCTTGATTGGACAATAAGAGATGAGAAATGCGACCAAGCAAAGGAGAATGAAACAAGTTACGCCTGCAAGGACAATAGCTACAGTTATAACCCAGACAATGGTCCTGGGTGTAGGTGCAGTTGCTCAGAGGGATATGAAGAAAACCCTTATCTTCCTCATGGTTGCAAGGATATCGATGAGTGTGAGGTTGATCACCCCTGCAATGTAACACATACATGCCAGAATTTACCAGGAAGTTATAGTTGCTCTTGCTCATGCCAGCTGGGTATGAAGGTGATAGCAAAAAAGATGGCACAGGCTGCAGTCCCATACCTAGCTCAGAGTTCAAATTTCCTTCGATTAATGTTGTCTTAG 918 0.476 MALRLILLLQIAVLVWAMEAAAELALPGCASHCGNISIPYPSGTTPECYLNQDFFINCSSTHQAFSTDSDIDALSISVSGQLRVLSYVARDCYNKSGQRAANNDPWMTLAKFPISHTRNKSCSGIGCCQTTIPANVRSYEISVESYNNHREVWAFNPSSFVFVAEDGAFSFSSTDLLDLQKKTRVPTVLDWTIRDEKCDQAKENETSYACKDNSYSYNPDNGPGCRCSCSEGYEENPYLPHGCKDIDECEVDHPCNVTHTCQNLPGSYSCSCSCQLGMKVIAKKMAQAAVPYLAQSSNFLRLMLS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0185 305 CDD EGF_CA 245 272 - -
Vvi17g0185 305 ProSiteProfiles EGF-like domain profile. 245 275 IPR000742 -
Vvi17g0185 305 ProSitePatterns Calcium-binding EGF-like domain signature. 245 270 IPR018097 GO:0005509
Vvi17g0185 305 SMART egfca_6 245 287 IPR001881 GO:0005509
Vvi17g0185 305 SUPERFAMILY EGF/Laminin 245 273 - -
Vvi17g0185 305 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 261 272 IPR000152 -
Vvi17g0185 305 Pfam Calcium-binding EGF domain 245 273 IPR001881 GO:0005509
Vvi17g0185 305 Gene3D Laminin 245 284 - -
Vvi17g0185 305 PANTHER OSJNBA0016N04.9 PROTEIN 5 120 - -
Vvi17g0185 305 Pfam Wall-associated kinase 119 230 IPR013695 GO:0004674|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0185 Vvi-Chr17 1708001 1709120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0185 1 272 Receptor kinase-like Gene Family AT1G21230 30.892 3.20e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0185 - - vvi:100252663 471.855