Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0160 ATGCAAATCCTCCAAAGCCCTCATTTGTTTACATTTCCTTCACACAGACCTCCCAGAACCCTACCAAAATCCTACCGCCTTCCCGTTCCTTTTCGTGCAGGAAACTTATCGGTTTCCGGAAAGTTCGTTGTCAAGTCTGTCAGCTCCGATGAGTTCCCCGTCGACGAGACCTTCCTCGAGAAATTCGGCCCCAAAGACAAAGAAACGGAAGACGAAGCTCGCCGCAAGAACTGGATTGAGCGTGGCTGGGCTCCGTGGGAAGAGATTCTCACTCCTGAAGCCGATTTCGCCCGCAAAAGCCTCAACGAAGGCGAGGAGGTTCCGCTGAAGACTCCGGAGGCGATAGAGGCGTTTAAGATGCTGAACCCTAAGTACCGGAAGAAGAAGATGGAGGAGAGTGGACTGACCGAGGACGAGTGGTACGCGAAGCAATTTGAGATCAAAGGCGAGATTCCGGAGCCGGTGAGGACGTTTTGGGACGGTCCATTGGTTGTGCGACATGTGCCTCCGAGAGACTGGCCGCCGAGAGGGTGGGAGGTTAATCGGAAAGAGTTGGCTTTTATACGCGAGGCGCACAAGTTACAGGCGGTGAGAGTTGATCCGAAAGGATTGGAATCAGCTAGGACGAACACGGATGATTTGAATTTGGAGAGGTATAAGACGTTCTTGAAGCAGTACAATGAGTGGGTTGAACACAACAAAGATAGATTGGAAGAGGAGTCATTTCAGGACGATCAAGATTACCATCCAGGTAGGAGGAAAAGAGGCAAAGACTATGAAGAAGGCATGTATGAGCTTCCATTTTATTATCCTGGACAAATTTGTGCAGGTAAAGTTACTACTCTTCACCTTTATCAAGGGGCATTTGTTGACATTGGAGGTGTATATGATGGGTGGGTCCCTATAAAAGGCAATGATTGGTATTGGATTCGCCACCACATAAAAGTTGGTATGCATGTCATTGTTGAAATCCTGGCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGATCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGGCGTGATTGTGGACGACCTCCTATTCCTAAAAAAGATCCAGGAATCAAAGTGGAAGAGGAACCTTTGTTGTCAAATCATCCTTATGTTGATAAGTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATGAGGATTTTGATGAAGAAAACAGTGTTGAATATACCAAAGTTTATTATAAGAAATCTTTGTTACCAAAAAAGATTCTGAAAACAAGTGTCAAAGAACTTGATCTGGAAGCTGCTCTTGCTGAGCGTGAGTACCATAATAAATTAAGGAAGGAAGCAAAAGAAAGAGGAGAGGAATATAAAATCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGTCGGCAGGCGCTTGGCCTCCCATTGGAGGAGCCAGGGAAGTTGGTAGATGCAAGTTACTTTGGGAAGGGCCAATATGATCCTCAACACCCATTGTATCGATATGACTACTGGGGAGAACCCAAGAACTCAGAAAAGAGTAAGCAGCAGAGAATGACAGATGCCCACAACAAATCTATTGTGGGCAAAGGCACCGTTTGGTATGAAATGTCCTATGAGGATGCCATCAAGCAGCGTATGCAGAGAGAAGCCCGTGCCAAAGAAATGAGGAAAGAAGCTGCTGAAGAAGATGACGATACAGAGGAAGAGGATGATGATGATGACGATGAATTTGATTTCAGCATCCTAGGTGACTCAAGTGTTGATTATTCAAATCAGCCTCTGGTGAACGGAACTGAATCTTCTAGAATGTCAGATGAAGGTATGTTTGAGAATTAG 2025 0.4449 MQILQSPHLFTFPSHRPPRTLPKSYRLPVPFRAGNLSVSGKFVVKSVSSDEFPVDETFLEKFGPKDKETEDEARRKNWIERGWAPWEEILTPEADFARKSLNEGEEVPLKTPEAIEAFKMLNPKYRKKKMEESGLTEDEWYAKQFEIKGEIPEPVRTFWDGPLVVRHVPPRDWPPRGWEVNRKELAFIREAHKLQAVRVDPKGLESARTNTDDLNLERYKTFLKQYNEWVEHNKDRLEEESFQDDQDYHPGRRKRGKDYEEGMYELPFYYPGQICAGKVTTLHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVDPNIDHLIFNRFDFPPIFHHDEDTNPDELRRDCGRPPIPKKDPGIKVEEEPLLSNHPYVDKLWQIHVAEQMILDDMEVNPHKYEGKKLTELTDDEDFDEENSVEYTKVYYKKSLLPKKILKTSVKELDLEAALAEREYHNKLRKEAKERGEEYKIYKLRRNIEMDEYDLIHWRRSFEEREALIRDISCRQALGLPLEEPGKLVDASYFGKGQYDPQHPLYRYDYWGEPKNSEKSKQQRMTDAHNKSIVGKGTVWYEMSYEDAIKQRMQREARAKEMRKEAAEEDDDTEEEDDDDDDEFDFSILGDSSVDYSNQPLVNGTESSRMSDEGMFEN* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0160 674 MobiDBLite consensus disorder prediction 367 387 - -
Vvi17g0160 674 MobiDBLite consensus disorder prediction 615 674 - -
Vvi17g0160 674 MobiDBLite consensus disorder prediction 624 644 - -
Vvi17g0160 674 ProSiteProfiles S1 domain profile. 272 340 IPR003029 GO:0003676
Vvi17g0160 674 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 42 659 IPR044967 GO:0000427|GO:0003723
Vvi17g0160 674 MobiDBLite consensus disorder prediction 647 667 - -
Vvi17g0160 674 Coils Coil 459 491 - -
Vvi17g0160 674 Coils Coil 601 632 - -
Vvi17g0160 674 SUPERFAMILY Nucleic acid-binding proteins 268 327 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0160 - - vvi:100264639 1338.94