Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0159 ATGGCTGTTACTTTTACCGGATCTACTTCTATAGCTTCCGCTCCAGCGAAAATTGGACCGATTTTCAGGCAAATCGCTCATTTCCGTCGAGGACGGTCCCTGGTTTCCGCCGGACCTCGATCGGCTCAGTTCTGTCCAAGCGTAGGGTTTCAGTGTCGATGGAGCAATTCCTCTGCTTTGCCTGCTGGTGTTAAAGCTCAGGTTGCAGCTGTTGAACAAGCAAGTGTTGATTCCACACAGAATGTTGAAGCTCCTGTTGTTGTTATCACCGGTGCTTCTAGAGGAATTGGCAAAGCAATTGCACTGGCTCTGGGCAAAGCGGGTTGTAAGGTCTTGGTGAACTATGCAAGGTCATCAAAGGATGCTGAAGAAGTTTCCAAACAGATTGAGGAATTTGGTGGGCAAGCTCTTACTTTTGGGGGTGATGTTTCCAAGGAGGAAGATGTAGAATCAATGATTAAAACCGTGGTTGATGCATGGGGAACCATTGATATACTGATAAACAATGCAGGAATTACACGGGATGGCTTGATGATGAGAATGAAAAAACCCCAATGGCAGGAGGTTATTGATTTGAATCTCACAGGTGTATTTCTCTGCACACAGGCTGCATCCAAAATTATGATGAAAAAAAGAAAGGGAAGAATTATCAACATATCCTCTGTTGTTGGCCTGGTTGGCAATGTTGGACAAGCCAATTACAGTGCTGCAAAGGCAGGGGTAATTGGCTTAACAAAAAGTGTTGCAAAGGAATATGCAAGCAGGAATATTAATGTTAATGCCGTGGCTCCTGGATTCATAGCATCTGATATGACTGCCAAGCTTGGGGAAGACATTGAAAAGAAAATCTTGGGTACCATTCCCCTAGGACGATATGGCCAACCTGAGGAAGTTGCTGGACTGGTAGAATTCTTAGCACTGAATCCTGCTGCCAGCTACATTACCGGACAGGTGTTTACCATTGATGGGGGGATGGTGATGTAG 984 0.4533 MAVTFTGSTSIASAPAKIGPIFRQIAHFRRGRSLVSAGPRSAQFCPSVGFQCRWSNSSALPAGVKAQVAAVEQASVDSTQNVEAPVVVITGASRGIGKAIALALGKAGCKVLVNYARSSKDAEEVSKQIEEFGGQALTFGGDVSKEEDVESMIKTVVDAWGTIDILINNAGITRDGLMMRMKKPQWQEVIDLNLTGVFLCTQAASKIMMKKRKGRIINISSVVGLVGNVGQANYSAAKAGVIGLTKSVAKEYASRNINVNAVAPGFIASDMTAKLGEDIEKKILGTIPLGRYGQPEEVAGLVEFLALNPAASYITGQVFTIDGGMVM* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0159 327 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 84 327 - -
Vvi17g0159 327 Pfam Enoyl-(Acyl carrier protein) reductase 91 325 - -
Vvi17g0159 327 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 221 249 IPR020904 GO:0016491
Vvi17g0159 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 234 253 IPR002347 -
Vvi17g0159 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 172 IPR002347 -
Vvi17g0159 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 222 IPR002347 -
Vvi17g0159 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 327 IPR036291 -
Vvi17g0159 327 PRINTS Glucose/ribitol dehydrogenase family signature 208 224 IPR002347 -
Vvi17g0159 327 PRINTS Glucose/ribitol dehydrogenase family signature 255 272 IPR002347 -
Vvi17g0159 327 PRINTS Glucose/ribitol dehydrogenase family signature 234 253 IPR002347 -
Vvi17g0159 327 PRINTS Glucose/ribitol dehydrogenase family signature 288 308 IPR002347 -
Vvi17g0159 327 PRINTS Glucose/ribitol dehydrogenase family signature 161 172 IPR002347 -
Vvi17g0159 327 PRINTS Glucose/ribitol dehydrogenase family signature 86 103 IPR002347 -
Vvi17g0159 327 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 81 326 - -
Vvi17g0159 327 Gene3D - 84 327 - -
Vvi17g0159 327 CDD BKR_SDR_c 86 326 - -
Vvi17g0159 327 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 85 270 - -
Vvi17g0159 327 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 87 326 IPR011284 GO:0004316|GO:0006633|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0159 Vvi-Chr17 1382553 1394077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0159 14 327 Acyl Lipid Metabolism Gene Families AT1G24360 70.064 1.93e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0159 K00059 - vvi:100254351 617.076