Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0158 ATGGCACCAACTGTTCCTATAGGCTTCACTGGACAGAGGGAATCAAAAAAGTTGTCGCAGAAAGGTCTTGCCCAAATGATGGCTAAAACACGGAAAGTTTCTAAGGGACATTCTTCGTCTGGGTTTGTTCCTGATTATCGTCATGCTGTTGAGACCATGGGTGAATCAGAAGGGTTTGGGAGCTCAGGTCGTGTTGACACTGAGATGACTGCTTCAGAGGATTCCTGTGTCCCCAAAAGGAAATGCATCAGTCTGAATGTGGATGGTTATGATAGTTTTTGTGTCCCTGTACAAGTCTTGTCTTTATCAAAGATGTCTCGGGCAGAAAGGAGGGATTTAGAGCGGAGGTTGAAAATGGAACTTCAACAGGTTAGGGCTTTTCAGAAGAAAATTGCCTCTCTTTGTTCAAATCTTGTTCCACTATCACCTACAAGTGATATTCGGAGTTGCAGCAATGGGCAAAAGAGGCCTCCAAAAGACAAAATTCAGAAGTCATCTGAAGCATCCACTCATCAGCGGAAGAAACGACCTCCTCCTCCTGGACGAAATGTGCCTAAAATGAAACGTGGTTTGTCTGGGCGGTTTGAATCAGTGAAGCAGGCTGCACCCCCGGGCACTTCGAATTCCATGTTGATGAAACAGTGTGAGACATTGTTGAGCCGGTTGATGACTCATCAATTTGGTTGGATTTTCAACAATCCTGTTGATGTCGTGGAGTTAAAGATTCCAGATTACTTCACTGTTATTAAGCATCCAATGGACTTGGGCACAATCAAAAGTAAGATGGCTTCAGGTGAATATTTGAGCCCATTTGATTTTGCTGCAGATGTGAGGCTTACTTTCTCAAATGCAATGACTTACAACCCACGGGGAAATGACGTTCATTTCATGGCTGAGACACTGAATAAATTTTTTGAAATGAGGTGGAAGCCTATAGAGAAGAAGCTTCCAGTAACCATTGATGTTGAGTCATTGCCTTCTAGATCAGATGCTCATCTAGAAATTGAAACTGCCGATAGGATGCCACCCTCGAAGAAGAAGAAAGTTGCACCGACAGATCACAAGATAAAGATGGAGCCAAACAAAAGGATCATGACCAAAGAGGAGAGGCATAATTTGGGCACAGAATTGGAAACTTTGCTTGGAGAACTGCCTGATGACATTGTTGATTTCCTAAAAGAGCAGAGTTTCAATGAAAATCAAGCCAGTGAAGATGAAATTGAAATTGATATTGATGCTCTAAGTGATGATACATTGTTCACACTGCGGAAGCTTTTAGATGGCTATTTGCTGGAGAAGCAGAAAAACCTGACAAAAACTGAACCTTGTGAAATGGAGCTTCGTAATGAGTCGGGGTTCAGCAATTCATCAATGCAACCATGCAAAGGCAATGACCATCTGGACGAGGATGTAGATATTGGTGGGAATGATCCTCCTACGTCAAGCTACCCACCAATTGAGATAGAAAAGGATGCAGCCCATAGAAACAGTAGATGCAGTAGTTCAAGTACTTCCAGTAGTGATTCGGGCTCTTCATCAAGCGACTCAGACTCAGGCAGTTCTTCAGGTGGTGAATCAGATGGTGCCAAAGCTTCAGTCCCTGTTACTAGCACAAAGGAAACTGTAGCTTCTGGAGCCGATTTAGACCCAAAGAAAAGCGATCTTGGCGAAGACATTGGAAATGAAGCTTTGAATATTCCTTGCAATGTCGATCCAAATTTAGAGTCTAAGCCAATTTCTGCGGAGGCTGATGGCCATCAAGAGGGGGAGAGTGCTCCATCTGAGAGGCAAGTCTCCCCCGAAAAGCTTTATCGTGCTGCTTTATTGAGGAGTCGCTTTGCTGACACCATACTAAAAGCTAGAGAAAAAACGCTTGAAAAGGGTGAAAAGGGGGATCCTGAGAAACTACGACTCGAGAGAGAGGAACTTGAAAGACGGCAAAAAGAAGAGAAAGCAAGGTTACAAGCAGAGGCCAAGGCAGCCGAAGAGGCTAGAAAGAAAGCTGAAGCAGAAGCTGCAGCTGAAGCTAAGAGGAAGAGGGAACTTGACAGAGAAGCTGCACGTCAGGCATTGCAACAGATGCAGAAGACTGTTGATATCAATGAGAATTGTCTGTTTTTGAAAGATTTAGAAATGCTAAGGGCTGCTCCCGAACCTTTACCGAGCTTGGATGAGAGAAGCCCAGATCAATCCCCAAATTGCCTGGGTAGTTTCAAACTCCAGGGAAGTAATCCCTTGGAACAACTTGGACTATACATGAAGATGGATGATGAAGAGGAGGAAGAAGTTGAGCCCCAATGCATTCCAGGTCCGGGAAATGATGTAGAGGAAGGAGAAATTGATTGA 2346 0.4408 MAPTVPIGFTGQRESKKLSQKGLAQMMAKTRKVSKGHSSSGFVPDYRHAVETMGESEGFGSSGRVDTEMTASEDSCVPKRKCISLNVDGYDSFCVPVQVLSLSKMSRAERRDLERRLKMELQQVRAFQKKIASLCSNLVPLSPTSDIRSCSNGQKRPPKDKIQKSSEASTHQRKKRPPPPGRNVPKMKRGLSGRFESVKQAAPPGTSNSMLMKQCETLLSRLMTHQFGWIFNNPVDVVELKIPDYFTVIKHPMDLGTIKSKMASGEYLSPFDFAADVRLTFSNAMTYNPRGNDVHFMAETLNKFFEMRWKPIEKKLPVTIDVESLPSRSDAHLEIETADRMPPSKKKKVAPTDHKIKMEPNKRIMTKEERHNLGTELETLLGELPDDIVDFLKEQSFNENQASEDEIEIDIDALSDDTLFTLRKLLDGYLLEKQKNLTKTEPCEMELRNESGFSNSSMQPCKGNDHLDEDVDIGGNDPPTSSYPPIEIEKDAAHRNSRCSSSSTSSSDSGSSSSDSDSGSSSGGESDGAKASVPVTSTKETVASGADLDPKKSDLGEDIGNEALNIPCNVDPNLESKPISAEADGHQEGESAPSERQVSPEKLYRAALLRSRFADTILKAREKTLEKGEKGDPEKLRLEREELERRQKEEKARLQAEAKAAEEARKKAEAEAAAEAKRKRELDREAARQALQQMQKTVDINENCLFLKDLEMLRAAPEPLPSLDERSPDQSPNCLGSFKLQGSNPLEQLGLYMKMDDEEEEEVEPQCIPGPGNDVEEGEID* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0158 781 MobiDBLite consensus disorder prediction 718 742 - -
Vvi17g0158 781 MobiDBLite consensus disorder prediction 146 209 - -
Vvi17g0158 781 Gene3D - 358 436 IPR038336 -
Vvi17g0158 781 SMART bromo_6 204 314 IPR001487 GO:0005515
Vvi17g0158 781 ProSiteProfiles NET domain profile. 355 437 IPR027353 -
Vvi17g0158 781 ProSiteProfiles Bromodomain profile. 223 295 IPR001487 GO:0005515
Vvi17g0158 781 MobiDBLite consensus disorder prediction 622 682 - -
Vvi17g0158 781 MobiDBLite consensus disorder prediction 726 742 - -
Vvi17g0158 781 Pfam Bromodomain 215 299 IPR001487 GO:0005515
Vvi17g0158 781 MobiDBLite consensus disorder prediction 756 781 - -
Vvi17g0158 781 CDD Bromo_plant1 211 309 IPR037377 -
Vvi17g0158 781 MobiDBLite consensus disorder prediction 153 174 - -
Vvi17g0158 781 PRINTS Bromodomain signature 258 276 IPR001487 GO:0005515
Vvi17g0158 781 PRINTS Bromodomain signature 276 295 IPR001487 GO:0005515
Vvi17g0158 781 PRINTS Bromodomain signature 226 239 IPR001487 GO:0005515
Vvi17g0158 781 PRINTS Bromodomain signature 242 258 IPR001487 GO:0005515
Vvi17g0158 781 PANTHER TRANSCRIPTION FACTOR GTE8 103 765 - -
Vvi17g0158 781 SUPERFAMILY Bromodomain 202 317 IPR036427 GO:0005515
Vvi17g0158 781 MobiDBLite consensus disorder prediction 450 600 - -
Vvi17g0158 781 Coils Coil 110 130 - -
Vvi17g0158 781 MobiDBLite consensus disorder prediction 497 543 - -
Vvi17g0158 781 Pfam Bromodomain extra-terminal - transcription regulation 365 427 IPR027353 -
Vvi17g0158 781 Coils Coil 638 697 - -
Vvi17g0158 781 Gene3D - 170 320 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0158 Vvi-Chr17 1370316 1380573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0158 - - vvi:100249253 1400.57