Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0140 ATGGATTGGAGTGGAGGAAGAGAGGCATTGGTGGTGTGCAGTGATAGGAGTATGAGTGTGGGAATAACAGTGTGGGACATGGTCAGTGGTGACCAACTTCTCCACATTCCAACCTGTGCGGCTTCTCCCCATGGGCTCTTGTGTCTGAGAGAGCAGTTCCTTGTGGCTTCTCAGATTCACAGGCATGGGTCACTTGGTGGTGGCGCCATCTTCATCTGGCCCTTGAATAAGCCTCAATCGCCCCTTCGAAACTATCCAATGGAGGCCATCGGCCCAGTGTCATGCTCAAAGGATGGTGTATATATTGTGGGTGGTGCTCCTTCGGGAAATGCCTATATTTGGGAGGTTGCTGATGGAAGACTGCTCAAGACTTGGCGTGCCCATCACAAATCTTTGACTAGCATGGTGTTTTCTGATGATGATTCTCTTCTAATTTCTGGTTCTGACGATGGGATGATCCGGGTTTGGTCTATGATTAGTTTGCTAGACATCGCAGATTGTGGAAGGTTTCCTTCTTTGTTCCATTCTTTGTTGGAGCACACATCCTCTATAACTGGTCTGTTATCTATATCAGGCAGCTCGAGTCCAGTTCTCGTATCGAGCTCCCTTGATGGCACGTGCAAGGTTTGGGACCTGATCAGGGGTAGGCTTCTACGAACCCGAGTTTTTCCAACAGCAATAACTGCTATTGTTCTTGATCCAGGGGAGCAGCTCTTATTCTCTGGAAGCGCAGATGGGAGAATTTTTGTTAGCATGCTTGACACTGGGCTGGTGGTGGATCCATTCAAAGTTCCAGAGGATCGACCGATTGTGCTAAATGGACACAAGTATTGTATGGTGGTTTAA 846 0.4823 MDWSGGREALVVCSDRSMSVGITVWDMVSGDQLLHIPTCAASPHGLLCLREQFLVASQIHRHGSLGGGAIFIWPLNKPQSPLRNYPMEAIGPVSCSKDGVYIVGGAPSGNAYIWEVADGRLLKTWRAHHKSLTSMVFSDDDSLLISGSDDGMIRVWSMISLLDIADCGRFPSLFHSLLEHTSSITGLLSISGSSSPVLVSSSLDGTCKVWDLIRGRLLRTRVFPTAITAIVLDPGEQLLFSGSADGRIFVSMLDTGLVVDPFKVPEDRPIVLNGHKYCMVV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0140 281 Gene3D - 1 159 IPR015943 GO:0005515
Vvi17g0140 281 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 263 IPR011047 -
Vvi17g0140 281 PANTHER WD-REPEAT PROTEIN 18 8 262 IPR045227 -
Vvi17g0140 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 220 IPR001680 GO:0005515
Vvi17g0140 281 SMART WD40_4 214 252 IPR001680 GO:0005515
Vvi17g0140 281 SMART WD40_4 170 211 IPR001680 GO:0005515
Vvi17g0140 281 SMART WD40_4 78 115 IPR001680 GO:0005515
Vvi17g0140 281 SMART WD40_4 118 157 IPR001680 GO:0005515
Vvi17g0140 281 FunFam Predicted protein 160 280 - -
Vvi17g0140 281 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Vvi17g0140 281 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Vvi17g0140 281 PRINTS G protein beta WD-40 repeat signature 102 116 IPR020472 -
Vvi17g0140 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515
Vvi17g0140 281 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
Vvi17g0140 281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
Vvi17g0140 281 Pfam WD domain, G-beta repeat 119 157 IPR001680 GO:0005515
Vvi17g0140 281 Pfam WD domain, G-beta repeat 173 211 IPR001680 GO:0005515
Vvi17g0140 281 Gene3D - 160 280 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0140 Vvi-Chr17 1238487 1241306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0140 70 255 Miscellaneous Gene Families AT5G08390 25.926 1.18e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0140 K14829 - vvi:100255963 525.398