Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0137 ATGAAGAGAGATGTTCAATTTGAGCAGGTTTTTAACCAATTTGATGAAGATCATGATGGTAAGCTATCTCCTTCCGAGCTTACGCGTTGTGTTGGCTTGATTGGCGGTGAGCTGCCACTGAAGGAAGCAGAAGCTGTCGTGCAGCAGCTGGATTCGGATGGAGATGGGTTGCTGAGTTTGGAGGATTTTATCAGATTGATGGAAGGAGAAGGGGGGGAGGGAGAAGAAGAGAAGATGAATGAATTGAGAGAGGCTTTTGGGATGTATGATATGGATGGTTGTGGGTTTATCACACCCAAGAGCCTCAAGAGGATGCTGAGCAGACTGGGTCAGAAAAAATCGGTGGATGAATGCAGGGTGATGATTAATCAGTTTGATCTGAATGGTGATGGTGTGCTTAGCTTTGATGAGTTCAAAGTTATGATGCTATAA 432 0.4468 MKRDVQFEQVFNQFDEDHDGKLSPSELTRCVGLIGGELPLKEAEAVVQQLDSDGDGLLSLEDFIRLMEGEGGEGEEEKMNELREAFGMYDMDGCGFITPKSLKRMLSRLGQKKSVDECRVMINQFDLNGDGVLSFDEFKVMML* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0137 143 CDD EFh 6 67 IPR002048 GO:0005509
Vvi17g0137 143 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Vvi17g0137 143 SMART efh_1 42 70 IPR002048 GO:0005509
Vvi17g0137 143 SMART efh_1 117 143 IPR002048 GO:0005509
Vvi17g0137 143 SMART efh_1 81 109 IPR002048 GO:0005509
Vvi17g0137 143 SMART efh_1 6 34 IPR002048 GO:0005509
Vvi17g0137 143 FunFam Calcium-binding protein CML38 73 143 - -
Vvi17g0137 143 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Vvi17g0137 143 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vvi17g0137 143 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vvi17g0137 143 Gene3D - 2 70 - -
Vvi17g0137 143 CDD EFh 81 142 IPR002048 GO:0005509
Vvi17g0137 143 Gene3D - 71 143 - -
Vvi17g0137 143 Pfam EF-hand domain pair 80 142 IPR002048 GO:0005509
Vvi17g0137 143 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Vvi17g0137 143 FunFam Putative calcium-binding protein CML19 2 70 - -
Vvi17g0137 143 SUPERFAMILY EF-hand 6 142 IPR011992 -
Vvi17g0137 143 ProSiteProfiles EF-hand calcium-binding domain profile. 113 143 IPR002048 GO:0005509
Vvi17g0137 143 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Vvi17g0137 143 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 81 142 - -
Vvi17g0137 143 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0137 Vvi-Chr17 1200420 1200851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0137 6 142 EF-hand Containing Proteins AT5G42380 54.745 2.87e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0137 K13448 - vvi:100262849 263.848