Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0131 ATGGTGTCCACGCGACGGAGTGGATCTCTCTCCGGCAACACTAACAAGCGATCTTCACCTTCGGAGGACAAGCCTCCCTCGCCCAAGCGTCAAAAGGTTGACAACAGTGGTGCTGCTTCAGAGAAGGCGGCGCCGGCGGTGGATAATTCGAAGGAATTCTGTGCGACAGCATCAGGGGCTGATCCCGTGGAATGTGGTTCCGGAGATCCTCCCATTTCCGGCGGTGCCTCTGGGGAAGCGGTGAATTCTGGGAAGGACGAGGCGGCTTTGGCGGCTCCGGTCTCGGCTCCGATCGCTGAGGGGACTTCGCCGATTGTGGTGGATAAGCCGAGGAGTTCTTTCTCGTCCTGGAGTGTTTATCAGAAGCAGAACTACGAGACTTCGATGCCCTGGTGTAAGCTTCTTTCGCAATTTTCACAGAACCCTAATGTTTCCATTGGTGTTATCAATTTCACCATTGGGTCAAGTCGACATTGTAATTTTCCCTTGAAGGATCAAACTATCAGTCCAATTTTGTGCAAGATTAAGCATAGTCAGCGTGAAGGCAGTGCTGTAGCAGTGCTAGAGAGTTCGGGTAGTAAGGGTTCGGTGCAGGTTAATGGGACTTTCATCAAGAGGGGTACCAGCTGTGTCCTTAACTCAGGGGATGAGGTGGTCTTTGGTTTGCTGGGGAACCATGCTTATATTTTCCAGCAACTTGTGACTGAGGTTGCTATTAAGGCACCTTCTTCAGGTGCTACGGGTGCTGAGGTTCAGAGTAGTGTGGGAAAATATCTGCACGTTGAAAGGAGGTCAGGGGATCCTTCAGCTGTTGCTGGGGCATCCATATTGGCATCTCTTTCAAGCCTGAGGCAAGATTTATCGCGTTGGAAGTCTCCGCCTCTCACCACTGGCAAAACCCAGCAAGGGACTGAACTGCCTCCTCATCCTATTATTCATGATAGTCCGGAGGTGGAGTTCAATGGTCTGGAAGGGAATTCGACTGCAAATGGTGGGAGTGATAAAGCTGCTGACATTGCAGCAGTCAGCAAGAACCTTTCTCTCGACTGCAACCAGGACTCTGGTGCAGAGGCAGGCAATGTATTGGAAGAAAGAAACGAGTGGACAAGGGATTCGCTGCCTGCATCCACATCAGGTATGTCTCTGCGGTGTGCAGTTTTCAAAGAAGACATTCACGCAGGAATTCTTGATGGCAAAGAGATACAAGTTTCATTTGATGATTTCCCATATTATTTAAGTGAAAATACGAAGAATGTTTTGATTGCTGCCTCATTTATACACCTGAAGCACAGAGAACATGCAAAATTTACATCAGAGCTTACTACTGTGAACCCAAGAATTTTGCTTTCTGGTCCGGCAGGGTCTGAAATATATCAGGAGATGTTGGCGAAGGCACTTGCTAATTACTTTGGAGCTAAATTGCTTATATTTGATAGCCATTCGTTTTTGGGTGGTTTATCTTCAAAGGAAGCAGAGCTGCTAAAAGATGGATCTAATGCAGAAAAATTCTGCAGCTGTACCAAACAAAGTTCTGGGTCCACTGAACTGGCTAAGAATATGGCTTCTTCAGCTGGTGAAGCAGATACACCCAACATTGCAAATGCACCGATTTCTTGTGAGCTGGAATCTCAACCAAAGCTGGAAAATGACACTGTACCCTCTTCTTCTGGGACAACTAAGAATCACTTGTTTAGAATAGGTGACAGAGTCAGATTCATGGGTTCAGCTTCTGGTGGATCATATTCAGCAGTTTCTGCTTCAAGGGGCCCGACATTTGGAATCCGTGGAAAGGTTCTATTACCTTTTGAAGATAATCCTTTGTCAAAAATTGGTGTAAGATTTGACAAACTCATAACAGATGGGGTTGACCTTGGGGGTCTCTGCGAGCCGGGTTATGGATTCTTCTGCAATGTTAATGATCTTCGTTTGGAAAACACGGGTGTGGAAGATCTGGACAAGTTACTCATTAACACATTGTTTGAGGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAAGCAGACTCGAAAAACTTCCAGATAATGTCGTCATAATTGGTTCCCATACTCATACTGACAATCGCAAGGAAAAGTCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCGGATAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGGATGAGGCACTTCTTGCATGTTGGAAGCATCAATTGGACCGGGATTCTGAAACTCTTAAAATGAAGGGAAATTTGAATCATCTTCGCACTGTTCTGACTCGGAGTGGGATGGAATGTGATGGACTTGAGAAATTGTGCATCAAGGACCAAACACTTACAAATGAAAGTGCGGAGAAGGTAGTTGGATGGGCTGTGAGCCATTATCTAATGTCAAATCCTGAAGCTGATGCTGATACAAGGCTGGTTTTGTCTAGTGAAAGTATCCAGTATGGAATCGGAATTCTTCAGGCTATTCAGAATGAGTCTAAGAGCTTGAAGAAGTCACTCAAGGATGTTGTAACAGAAAATGAATTTGAGAAAAGGCTTCTAGCTGATGTTATTCCACCATCTGACATTGGGGTCACATTTGATGATATTGGGGCCCTGGAAAATGTCAAGGACACATTGAAGGAGTTGGTGATGCTTCCACTACAAAGGCCTGAACTTTTTTGCAAGGGGCAATTAACCAAGCCTTGCAAGGGCATACTTCTATTTGGCCCCCCTGGAACAGGCAAGACAATGCTTGCTAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAATATTTCAATGTCAAGCATCACATCTAAGTGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGAATCTTTGTGTAACTGCTGCACATCGTCCTATCAGAGAGATACTGGAAAAAGAAAAAAAGGAACGAGCTGCAGCACAAGCCGAGGGCAGACCTCCTCCAGCTTTGAGTGGGAGTGCTGATATTCGACCTCTAAACATAGATGACTTTAAATATGCTCATGAACGGGTTTGCGCTAGCGTTTCATCCGAGTCAGTAAACATGACTGAGCTAATACAATGGAATGAACTTTATGGAGAAGGGGGTTCTAGAAGAAAGAAGGCTCTCAGCTACTTCATGTGA 3651 0.4541 MVSTRRSGSLSGNTNKRSSPSEDKPPSPKRQKVDNSGAASEKAAPAVDNSKEFCATASGADPVECGSGDPPISGGASGEAVNSGKDEAALAAPVSAPIAEGTSPIVVDKPRSSFSSWSVYQKQNYETSMPWCKLLSQFSQNPNVSIGVINFTIGSSRHCNFPLKDQTISPILCKIKHSQREGSAVAVLESSGSKGSVQVNGTFIKRGTSCVLNSGDEVVFGLLGNHAYIFQQLVTEVAIKAPSSGATGAEVQSSVGKYLHVERRSGDPSAVAGASILASLSSLRQDLSRWKSPPLTTGKTQQGTELPPHPIIHDSPEVEFNGLEGNSTANGGSDKAADIAAVSKNLSLDCNQDSGAEAGNVLEERNEWTRDSLPASTSGMSLRCAVFKEDIHAGILDGKEIQVSFDDFPYYLSENTKNVLIAASFIHLKHREHAKFTSELTTVNPRILLSGPAGSEIYQEMLAKALANYFGAKLLIFDSHSFLGGLSSKEAELLKDGSNAEKFCSCTKQSSGSTELAKNMASSAGEADTPNIANAPISCELESQPKLENDTVPSSSGTTKNHLFRIGDRVRFMGSASGGSYSAVSASRGPTFGIRGKVLLPFEDNPLSKIGVRFDKLITDGVDLGGLCEPGYGFFCNVNDLRLENTGVEDLDKLLINTLFEAVYSESRDSPFILFMKDAEKSIVGNSESYSMFKSRLEKLPDNVVIIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKDVPKTTKLLTKLFPNKVTIHMPQDEALLACWKHQLDRDSETLKMKGNLNHLRTVLTRSGMECDGLEKLCIKDQTLTNESAEKVVGWAVSHYLMSNPEADADTRLVLSSESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIREILEKEKKERAAAQAEGRPPPALSGSADIRPLNIDDFKYAHERVCASVSSESVNMTELIQWNELYGEGGSRRKKALSYFM* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0131 1216 Pfam AAA+ lid domain 1105 1140 IPR041569 -
Vvi17g0131 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 1193 IPR027417 -
Vvi17g0131 1216 MobiDBLite consensus disorder prediction 1 49 - -
Vvi17g0131 1216 Gene3D - 1084 1178 - -
Vvi17g0131 1216 Gene3D - 910 1191 IPR027417 -
Vvi17g0131 1216 CDD FHA 133 231 - -
Vvi17g0131 1216 Coils Coil 872 892 - -
Vvi17g0131 1216 Pfam FHA domain 152 221 IPR000253 GO:0005515
Vvi17g0131 1216 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 387 1215 - -
Vvi17g0131 1216 SUPERFAMILY SMAD/FHA domain 150 228 IPR008984 GO:0005515
Vvi17g0131 1216 Pfam ATPase family associated with various cellular activities (AAA) 952 1081 IPR003959 GO:0005524|GO:0016887
Vvi17g0131 1216 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0131 1216 Gene3D - 130 238 - -
Vvi17g0131 1216 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 910 1086 - -
Vvi17g0131 1216 SMART AAA_5 948 1085 IPR003593 GO:0016887
Vvi17g0131 1216 CDD RecA-like_ATAD1 915 1081 - -
Vvi17g0131 1216 MobiDBLite consensus disorder prediction 289 304 - -
Vvi17g0131 1216 MobiDBLite consensus disorder prediction 289 314 - -
Vvi17g0131 1216 MobiDBLite consensus disorder prediction 1143 1165 - -
Vvi17g0131 1216 ProSitePatterns AAA-protein family signature. 1055 1074 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0131 Vvi-Chr17 1100479 1115348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0131 911 1163 Calmodulin-binding Proteins AT3G56690 40.000 5.40e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0131 - - vvi:100266414 2345.08