Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0128 ATGGCAATGTCGGCGAATCACAATAAAACCCCCGGAAAGAGTGTTGGATTGGGATCAGTTAGCAGTGGAAATGTGGGGCAAACAATGCCTCTGAACCACCAACCCCATCTTCTCTCTCAGTCACAACCTCAAACACTTGGTGGGACTCACTTTCCTGGTCATTTTCAGTTGTCTGAGCCACAGGCACAGGCTTTAGCACAAACCCAGTATGCGCAAGCACATGCGCAAGCGCAGGCTCAAGCGGCTCATGCCCAATTCCAAGCTCAGTTGCAGGCTCAAGCTCAGTCCCTTGCCCAGTTGCATAGCGCTGGGACTAGTAATTTGGGCGTTTCCTCGCCCTCTGTTTCGACCCCAGGTACGGGGAGTGCCAAGCGGGGTAGTCAGAAACCACCTTCACGGCCTCATGGTTCGGCCAATGCTACTAATCCAGCTTCTCCATTTAAGACCATGGAGCTGACCCCTGCAGCCCGGAGGAAGAAGCCAAAGCTTCCAGAAAAGCAAATACCTGATAAAATTGCTGCCCTAGTGCCGGAGTCTGCTATTTATACACAGTTGGTTGAATTGGAGGCCCGGGTGGATGCTGCTCTTGCAAGAAAGAAGACTGATATCCAAGAGTCCCTCAAAAACCCTCATCGTGTTCAGAAAACACTTCGGATTTATGTTTTCAATACTTTTGCAAATCAGACAAGAATGAACCCGGAGAAAACAAACGCAGAGCCTCCTTCATGGACACTTAAGATAATTGGGAGGATCTTGGAAGATGGGGTAGACCCTGTCCTTGCGGGAACTAGTGATAAATTGAGCTCTTCATACCCAAAATTTTCATCTTTCTTTAAGAAAATGACTATTTACTTGGACCAGGGTCTTTATCCGGATAACCATGTAATTTTATGGGAGAATGCTCGGTCTCCTACACTTCATGAGGGCTTTGAAGTGCAAAGGAAGGGGGATAAAGAATTCAACGCAATAATAAGATTAGAAATGAATTATGTACCTGAAAAATTTAAACTTTCAACAGCCCTGTCGGAAGTTCTTGGACTTGAGGTAGATACACGCCCAAGGATTGTAGCTGCAATCTGGCACTATGTGAAGAGTAGGAAGTTACAGAACCCGAATGACCCCTCATTCTTTGTGTGTGATCCACCTCTTCGTAAAGTATTTGGGGAAGAGAAAATAAAATTTGCCATGGTTCCACAAAAGATATCACATCATTTGTCTCCCCCACAACCTATACATTTGGAGCATAAGGTCAAGCTTTCAGGGAATAGTCCAGCTGGAACTACGTGTTATGATGTGTTGGTTGATGTACCTCTTCCATTAGAGAAGGAAATGTCTGCTTTCTTGGCAAACACTGAGAGGCATAAAGAGATTGATGCCTATGATGAAACAATTTGCGCTTCTATAAAGAAGATTCAAGAGCACAATCGAAGGCGGGCTTTCTTCCTTGGTTTCAGTCACTCTCCAGCAGAGTTTATTAATGCTTTGATAACTTCTCAAAGCAGGGATCTAAAACTTGTTGCAGGAGATGCAAGTCGTAATGCTGAAAAGGAGCGGCGAGCTGACTTCTATAACCAACCTTGGGTTGATGATGCTGTTATCCGCTACTTGAACCGCAAGCCTGCTCCCGGAATGGAAGCACATGAATAG 1647 0.4554 MAMSANHNKTPGKSVGLGSVSSGNVGQTMPLNHQPHLLSQSQPQTLGGTHFPGHFQLSEPQAQALAQTQYAQAHAQAQAQAAHAQFQAQLQAQAQSLAQLHSAGTSNLGVSSPSVSTPGTGSAKRGSQKPPSRPHGSANATNPASPFKTMELTPAARRKKPKLPEKQIPDKIAALVPESAIYTQLVELEARVDAALARKKTDIQESLKNPHRVQKTLRIYVFNTFANQTRMNPEKTNAEPPSWTLKIIGRILEDGVDPVLAGTSDKLSSSYPKFSSFFKKMTIYLDQGLYPDNHVILWENARSPTLHEGFEVQRKGDKEFNAIIRLEMNYVPEKFKLSTALSEVLGLEVDTRPRIVAAIWHYVKSRKLQNPNDPSFFVCDPPLRKVFGEEKIKFAMVPQKISHHLSPPQPIHLEHKVKLSGNSPAGTTCYDVLVDVPLPLEKEMSAFLANTERHKEIDAYDETICASIKKIQEHNRRRAFFLGFSHSPAEFINALITSQSRDLKLVAGDASRNAEKERRADFYNQPWVDDAVIRYLNRKPAPGMEAHE* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0128 548 MobiDBLite consensus disorder prediction 104 165 - -
Vvi17g0128 548 SUPERFAMILY SWIB/MDM2 domain 325 415 IPR036885 -
Vvi17g0128 548 SMART swib_2 331 410 IPR019835 -
Vvi17g0128 548 MobiDBLite consensus disorder prediction 104 148 - -
Vvi17g0128 548 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 145 504 - -
Vvi17g0128 548 Gene3D SWIB/MDM2 domain 327 412 IPR036885 -
Vvi17g0128 548 MobiDBLite consensus disorder prediction 1 55 - -
Vvi17g0128 548 Pfam SWIB/MDM2 domain 334 405 IPR003121 -
Vvi17g0128 548 CDD SWIB_like 337 405 - -
Vvi17g0128 548 ProSiteProfiles SWIB/MDM2 domain profile. 330 407 IPR003121 -
Vvi17g0128 548 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0128 Vvi-Chr17 1072084 1074691 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi17g0128 SWIB 7.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0128 K11650 - vvi:100250968 1013.06