Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0126 ATGGACACCACCTCGTCACAGCCGTCGAATTCCAATCAGACGGCCAGCGAAGCTTCGAAGTACCTCGTGAACCTGCCCTCTCGCGGCCTCTTCTCATCCACTGTCATTTCTTCAAATCCGGGTGGAATGCGAGTTTATATATGTGATCATGAAACTTCACCTCCAGAGGAACAACTGATAAAGACCAACCAAACCAACATACTAATCAGATCTCTCACGCTTAAGAAACAGAAGGGTGATTCAAGTTCAAAGGATGTAAAGGGTACAACTGCAGCAGAGGTTTCTAAAAAAAGGACTGCTGAAAGAGCTTTAGATAGCAGATCTTCATCTAAGAGAGCTATGACCAATGCTCAAAGTAGTTCTCGACGAGAAGGATCAGGATCAAGCACCCGCACATCTGATAGGGATTACCAGAGTTTGACTGTTGAGAGGCTCCGTGCTCTTCTTAAGGAGAGAGGTCTTTCACCAAAAGGAAAGAAGGATGAACTTATCGCACGCCTCAAAAGTGTAAATGGTTAA 519 0.4509 MDTTSSQPSNSNQTASEASKYLVNLPSRGLFSSTVISSNPGGMRVYICDHETSPPEEQLIKTNQTNILIRSLTLKKQKGDSSSKDVKGTTAAEVSKKRTAERALDSRSSSKRAMTNAQSSSRREGSGSSTRTSDRDYQSLTVERLRALLKERGLSPKGKKDELIARLKSVNG* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0126 172 MobiDBLite consensus disorder prediction 90 108 - -
Vvi17g0126 172 Gene3D SAP domain 134 171 IPR036361 -
Vvi17g0126 172 MobiDBLite consensus disorder prediction 74 140 - -
Vvi17g0126 172 Pfam Det1 complexing ubiquitin ligase 22 78 IPR018276 -
Vvi17g0126 172 Pfam SAP domain 137 168 IPR003034 -
Vvi17g0126 172 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 16 155 IPR033575 GO:0032434
Vvi17g0126 172 SMART sap_9 137 171 IPR003034 -
Vvi17g0126 172 SUPERFAMILY SAP domain 136 169 IPR036361 -
Vvi17g0126 172 ProSiteProfiles SAP motif profile. 137 171 IPR003034 -
Vvi17g0126 172 MobiDBLite consensus disorder prediction 109 136 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0126 - - vvi:100264568 316.235