Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0125 ATGTCGAGCCCAGAGGCAAAGCTTGGGATGAGAGTGGAAGACTTGTGGGATGTTCAGGAGCCGCAGCTGACTCCTACAGAGAAGCTCAATGCATGCTTTGAAAGTGTGCCCGTCTCTGCTTTTCCACCAGCTTCTTCTCAAGTGATTGAGATAAAATCAGACTGCAGTTTGGCTGAAGCTGTTCAAATACTGACCAAGCACAGAATTCTCAGTGCACCTGTGGTGGATGTTGAGGCACCGGAGGACGCGAGTTGGATCGACAGATACATTGGCATTGTAGAGTTTGCGGGTATTGTCGTATGGATTCTGTATCAGTCAGAGCTTGCATCTCCCCGGAAGAATGGTGGGGCTCCTGCTGCAGGGTTTGGCACAGGTGGGAAAGAGGAAGCCATAACTGCTGTTGCTGCAGCTGCTAATGGAATGAATTCTCCTAGAAGGCTTAAGAACTTAGGCTTTGAACCAGCTGAACCGACTCCAGGGAGCTTCTTTGAGGCTTTAACCTCTTCGGAATTTTACAAGAACACAAAGAAATCCAACTCCTTCTTGACCATGCTCTTGCTGCTTTCCAACTACAAAATGAAGAGTGTCCCTGTGGTTGATCTGGGCGAAGGAAAGATTGATAACATTGTCACGCAGTCTGCTGTCATTCACATGTTAGCGGAATGTGTCGGGCTCTCTTGGTTCGAAAGATGGGGAGCTAAGAAAATGTCTGAACTCGGCCTTCCCACAATGAAGCCTGATCAAGTTATCAAGGTGAACGAGGATGAACCAGTTCTCCAGGCGTTTAAATTGATGAGGAAGAAGGGGATCGGAGGGATACCTGTGGTTGAAAGCGGAGGTAGAAAGGCTGTTGGTAATATTAGTATAAGAGATGTTCAGTTCCTTCTAACCACACCAGAGATCTACAGAGAGTTCAGATCGATCACAGCCAAGAACTTCCTCGTGGCAGTTAGGAAGTACCTGGAGCAGCACAACGAGGCCTCACCCATGTTGAGTGGTATGATCACCTGCAGACGAAATCAAACAGTCAAGGAAATGATTCTAATGCTCGACTCAGTGAAGATCCAAAGGGTTTATGTTGTGGATGAAGATGGGAATCTGGAGGGGGTGATCACGCTCAGAGACATAATCTCGAAGCTAGTGCACGAGCCTCGCGGCTACTTCGGGGATTTCTTTGATGGCGTTTTGCCAATGCCTCAGAACAGCAGAGTGTAA 1215 0.479 MSSPEAKLGMRVEDLWDVQEPQLTPTEKLNACFESVPVSAFPPASSQVIEIKSDCSLAEAVQILTKHRILSAPVVDVEAPEDASWIDRYIGIVEFAGIVVWILYQSELASPRKNGGAPAAGFGTGGKEEAITAVAAAANGMNSPRRLKNLGFEPAEPTPGSFFEALTSSEFYKNTKKSNSFLTMLLLLSNYKMKSVPVVDLGEGKIDNIVTQSAVIHMLAECVGLSWFERWGAKKMSELGLPTMKPDQVIKVNEDEPVLQAFKLMRKKGIGGIPVVESGGRKAVGNISIRDVQFLLTTPEIYREFRSITAKNFLVAVRKYLEQHNEASPMLSGMITCRRNQTVKEMILMLDSVKIQRVYVVDEDGNLEGVITLRDIISKLVHEPRGYFGDFFDGVLPMPQNSRV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0125 404 ProSiteProfiles CBS domain profile. 244 304 IPR000644 -
Vvi17g0125 404 Pfam CBS domain 330 381 IPR000644 -
Vvi17g0125 404 Pfam CBS domain 248 292 IPR000644 -
Vvi17g0125 404 Pfam CBS domain 45 94 IPR000644 -
Vvi17g0125 404 CDD CBS_pair_SF 247 377 - -
Vvi17g0125 404 ProSiteProfiles CBS domain profile. 330 388 IPR000644 -
Vvi17g0125 404 ProSiteProfiles CBS domain profile. 44 108 IPR000644 -
Vvi17g0125 404 SMART cbs_1 248 297 IPR000644 -
Vvi17g0125 404 SMART cbs_1 47 103 IPR000644 -
Vvi17g0125 404 SMART cbs_1 333 381 IPR000644 -
Vvi17g0125 404 Gene3D - 233 383 IPR046342 -
Vvi17g0125 404 SUPERFAMILY CBS-domain pair 237 390 IPR046342 -
Vvi17g0125 404 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 33 381 - -
Vvi17g0125 404 Gene3D - 16 224 IPR046342 -
Vvi17g0125 404 SUPERFAMILY CBS-domain pair 22 220 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0125 Vvi-Chr17 1034830 1037389 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0125 - - vvi:100259395 768.844