Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0122 ATGGATATCCCGCTGTCTCGTAATCAGAACATGTCAATGGATCAGATCCAGAGTAACTGTGGCTTGCCGCATTTGTTCTCAGTTGACGAGATTCTGAGAGAAAAGTCCTTTTCTCAGCGTTTGCTTCCATTCAACAGAAGAAAACGGAGGACCCCATTTTCTCAGATCAGGTGTTCTTCCTTGGAACAAGGTCTGCAACCACGGCCCAAGCCGAAACCTTCGACTATTGAGCTGAATGTGGGAAAAGAAGCTCAAGTAAATGAAACACAACTCAGGAAACCCAGTTCAGAGCTATGTGGTCAGATCGAGAAATTAGTTTTCTTTAAGAGGTACCATGAGGCACTTGAATTATTTGAAATTTTAGAGTTGAATGGTGCTTATGATATGGATAGCGAGACATATGATGCATTAGTGAGTGCGTGTATTGGGTTGAAATCAATTAGAGGGGTGAAAAAGGTGTTCAATTATATGATTAATAGTGGGCTTGATCCGGATGAGTATTTGAGGAACAGGGTTTTGTTAATGCATGTGAAATGTGGGATGATGATTGATGCACGTAGATTGTTTGATGAAATGCCAGAAAAGAACATTTTGTCCTGGAATACGATAATTGGGGGACTTGTGGATGCTGGAGATTATTTCGAGGCATTCCGGTTGTTTCTAATGATGTGGCAGGATTTTTCTGATGCTGGGTCCCGGATGTTTGTGACAATGATTCGGGCATCTGCTGGACTGGGGCTCATTTTTGCTGGAAGACAATTACACTCTTGTTCTTTGAAGACAGGTGTAGGTGGAGATGTTTTTGTGGCTTGTGCACTGATTGACATGTACAGTAAGTGTGGGAGCATTGAAGATGCTCAGTGTGTTTTCGATCAGATGCCAGAGAAGACCACAGTAGGATGGAATTCCATTATTGCGGGTTATGCACTTCATGGTTATAGCGAGGAAGCATTGAGTATGTATTATGAAATGCGGGATTCTGGCGTCAAAATAGACAATTTCACTTTTTCAATTATTATAAGAATATGTGCTAGGTTAGCTTCATTAGAACATGCTAAGCAAGCTCATGCAGGTCTAGTTCGTCATGGTTTTGGTTTAGATATTGTAGCTAACACAGCGCTTGTGGACTTGTATAGCAAATGGGGAAGGATTGAAGATGCGAAGCATGTTTTTGACATGATGCCTCACAAGAATGTCATATCTTGGAATGCCTTGATTGCGGGTTATGGTAATCATGGTCGAGGAGTTGAGGCTGTTGAGATGTTTGAACGGATGCTTCATGAAGGAATGGTGCCTAACCATGTCACTTTTCTTGCTGTTCTGTCTGCTTGTAGCTATTCAGGTTTATCAGATCGTGGTTGGGAGATTTTTGAATCGATGAGTAGGGATCACAAGATTAAGCCCCGAGCAATGCACTATGCTTGTATGATTGAATTATTGGGTCGAGAAGGGCTTTTGGATGAAGCCTTTGCATTGATAAAAGATGCTCCTTTTAAGCCTACAGTGAATATGTGGGCTGCCTTGCTGACAGCTTGTAGGGTGCACAAGAATTTTGAGCTCGGAAAATTTGCTGCTGAGAAACTTTATGGAATGGGGCCTGAAAAGCTGAGTAATTATGTTGTGCTTTTGAATATATATAACAGGTCTGGCAGGTTGGAGGAAGCTGCTGCTGTCATTCAGACCCTGAAAAGAAGGGGTTTAAGAATGCTTCCTGCATGTAGTTGGATTGAGATTAAGAAGCAGCCATATGGTTTCATTTCTGGAGATAAATGTCATGCTCAATCAAAAGAGATCTACCAGAAATTAGACGAGTTGATGCTGGAGATCTCAAAACATGGTTATGTTCCCCAGGATAAATTCTTGCTTCCGGATGTCGATGAACAGGAAGAGCGTGTATTGTTGTACCACAGTGAGAAGTTGGCAATTGCTTTTGGGCTTATCAATACTTCAGATTGGACACCATTGCAAATTGTGCAGAGCCATCGGATTTGTGGTGACTGCCATAGTGCAATTAAGTTGATAGCCCTGGTCACTAGACGTGAAATTGTTGTGAGGGATGCTAGCAGATTCCACCATTTCAAAGATGGGAGTTGTTCTTGTGGGGACTACTGGTGA 2115 0.4213 MDIPLSRNQNMSMDQIQSNCGLPHLFSVDEILREKSFSQRLLPFNRRKRRTPFSQIRCSSLEQGLQPRPKPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0122 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 296 IPR002885 -
Vvi17g0122 704 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 252 354 - -
Vvi17g0122 704 FunFam Pentatricopeptide repeat-containing protein 96 251 - -
Vvi17g0122 704 Gene3D Tetratricopeptide repeat domain 95 250 IPR011990 GO:0005515
Vvi17g0122 704 Gene3D Tetratricopeptide repeat domain 416 612 IPR011990 GO:0005515
Vvi17g0122 704 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 314 641 IPR046960 GO:0003723|GO:0009451
Vvi17g0122 704 Gene3D Tetratricopeptide repeat domain 251 361 IPR011990 GO:0005515
Vvi17g0122 704 Pfam DYW family of nucleic acid deaminases 613 704 IPR032867 GO:0008270
Vvi17g0122 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Vvi17g0122 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Vvi17g0122 704 Pfam PPR repeat 272 296 IPR002885 -
Vvi17g0122 704 Pfam PPR repeat 199 224 IPR002885 -
Vvi17g0122 704 Pfam PPR repeat 473 494 IPR002885 -
Vvi17g0122 704 Pfam PPR repeat 175 197 IPR002885 -
Vvi17g0122 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vvi17g0122 704 NCBIfam pentatricopeptide repeat 372 397 IPR002885 -
Vvi17g0122 704 NCBIfam pentatricopeptide repeat 400 433 IPR002885 -
Vvi17g0122 704 NCBIfam pentatricopeptide repeat 199 224 IPR002885 -
Vvi17g0122 704 NCBIfam pentatricopeptide repeat 133 166 IPR002885 -
Vvi17g0122 704 NCBIfam pentatricopeptide repeat 301 332 IPR002885 -
Vvi17g0122 704 Pfam E+ motif 583 609 IPR046849 -
Vvi17g0122 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Vvi17g0122 704 Pfam PPR repeat family 397 444 IPR002885 -
Vvi17g0122 704 Pfam PPR repeat family 297 344 IPR002885 -
Vvi17g0122 704 FunFam Pentatricopeptide repeat-containing protein At5g50390, chloroplastic 416 676 - -
Vvi17g0122 704 Pfam E motif 515 577 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0122 Vvi-Chr17 1017857 1019971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0122 113 704 Glycoside Hydrolase AT3G49170 38.040 2.65e-141 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0122 - - vvi:100257575 1430.23