Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0121 ATGGCGCCTCACGAAGTTCGTCGCCCGTTCAAACGTCCGGCTATCTCCGATCAACAGAAGCGCCGGGAGCTCTCGCTTCTCAGGCAAGCGCAGAACCGGCGAGACGCTCAACACCATGCTCGCTGCTTAGCATCCACCGTCGTCTCCCTCCAAGCCCCTAACCCTGAACCAATCTCCGAACCGGAAATCGCAGACGAACCTAGTGTCGAATCTGAGTCCCAATCTATACCTAGGGACATTGATGTGCGTCAGGCATCGAAGCTCAAAGGCTACGAAGCTCGTCGCTGGTTCGCAAGGCAGTTGATGCTACCGGAGTGGATGATCGATGTTCCAGACCGCTTGAGTCACGACTGGTATGTATTAGCACGGCCCACTGGAAAACGATGTTTTGTTGTTTCTTCTGATGGAACAACAGTTAGTAGGCTACGCAATGGCTCTGTCTTGCACCATTTCCCTTCTGCTCTGCCCAACGGGGCAAGGACAAGAGATATCTCTGGTTCTGCTCAATCATATTGTATTCTGGATTGCATATTTCATGAGTTGGATCAAACTTATTACGTGATTGACATGGTGTGCTGGCGGGGATACTCTTTATATGACTGCACTGCTGAGTTCAGATTTTTTTGGGTGAACTCCAAGCTTGCTGAGACTGGGGCCTGTGACCCTCCTTCACCTTACCATAGATACAGATTTAGTGTGGTCCCCATTTACAACTGTGACCAGAATGGTCTGTACACTGCTTACACAGGGGCAGCACCTTATGTCAAGGATGGACTATTGTTTTATAACAGGCATGCGCATTATCAAACTGGAAACACACCACTGACATTGGTTTGGAAGGATGAGAACTGTAGTCAGTATGTTATCGATACAGATAGTAAAGGACAGGTTCCAAGTCAACAACAGGTGGTTTTGGAGCTACAAGATGATGGAAACCTGACAACATCAGATGATCCTCCTGTTGTATTTGGGTCCTTAGATGGGGACTTCATACAAAAGTCTGGGCTCTGTTCAGGAAACCTTCTACGATTTGCTGTTAGTGATGGTGGATTGAGTTTTGTGGATGGAAAGCTTGAAAGGGCTGATCTACACTACCTGGGCAAGGTGAATCGAGCACGTGCTTTCGCAGATAGTTATTCCAAGGTCATGTTCCAGCATTCAGTTAGGCATTCTCCTCTGAGCATTGATGATCTGTTAGCATCCATTACCTCGACAAATGATCAAGAAAAGGAAGCCTGTGATGTGGAGATGGCCGGTTGA 1260 0.4794 MAPHEVRRPFKRPAISDQQKRRELSLLRQAQNRRDAQHHARCLASTVVSLQAPNPEPISEPEIADEPSVESESQSIPRDIDVRQASKLKGYEARRWFARQLMLPEWMIDVPDRLSHDWYVLARPTGKRCFVVSSDGTTVSRLRNGSVLHHFPSALPNGARTRDISGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWVNSKLAETGACDPPSPYHRYRFSVVPIYNCDQNGLYTAYTGAAPYVKDGLLFYNRHAHYQTGNTPLTLVWKDENCSQYVIDTDSKGQVPSQQQVVLELQDDGNLTTSDDPPVVFGSLDGDFIQKSGLCSGNLLRFAVSDGGLSFVDGKLERADLHYLGKVNRARAFADSYSKVMFQHSVRHSPLSIDDLLASITSTNDQEKEACDVEMAG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0121 419 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0121 419 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 95 280 - -
Vvi17g0121 419 CDD Snurportin-1_C 96 282 - -
Vvi17g0121 419 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 418 IPR017336 GO:0005634|GO:0005737|GO:0061015
Vvi17g0121 419 Gene3D DNA ligase/mRNA capping enzyme 2 306 - -
Vvi17g0121 419 MobiDBLite consensus disorder prediction 51 76 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0121 K13151 - vvi:100249176 865.529