Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0111 ATGTGGGCAGCTCAATGGTACAAGTATAGGAGGCCTCGGCAGTGGCCGATGTCAAGCTGTTTAGGGGCAGTGGGCTTTGAACTCCCTGCTGCCATTGGAGCCGCTGTTGCCAGACCTGAAGCTTTAGTCATCGACTTCAACAGTGATGGGAGTTTCATGATGAATGTTCAGGGGCTGGCAACAGTCCAGGTGGAGAACCTCCCTGTTAAGATGATGATACTGAACGATCAGTATCTGGGTATGGCTGCTCAGTGGGGGGATCTTTTCTATAAGGCTAATAGGGCTTACACAAACCTGGGAAACCCAGTAAAAAGGTCTGAAATTTTCCCGACTATGATGAGGTTTGCTGAAGCTTGTGACATCCATGCAGCCCGGGTAGAGAAGAAGAGTGATATTAGGACAGCAATTCAGAAGATGTTATACACACCCTGGACGTAA 438 0.4863 MWAAQWYKYRRPRQWPMSSCLGAVGFELPAAIGAAVARPEALVIDFNSDGSFMMNVQGLATVQVENLPVKMMILNDQYLGMAAQWGDLFYKANRAYTNLGNPVKRSEIFPTMMRFAEACDIHAARVEKKSDIRTAIQKMLYTPWT* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0111 145 Gene3D - 1 141 - -
Vvi17g0111 145 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 1 143 IPR045229 -
Vvi17g0111 145 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 1 140 IPR011766 GO:0003824|GO:0030976
Vvi17g0111 145 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 142 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0111 Vvi-Chr17 942499 942936 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0111 K01652 - vvi:100243927 295.049