Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0109 ATGGATGCCATCGACTCGGCCGTTGATCCTCTGAGAGAGTTCTCCAAGGACAGTGTTCGTCTTGTCAAGCGTTGCCACAAGCCCGATCGCAAAGAGTATACGAAGGTGGCGTTCCGTACAGCTACTGGATTCGTCGTGATGGGATTCGTTGGGTTTTTCGTGAAGTTGATCTTCATTCCGATCAACAACATCATCGTTGGGTCTGGTTAG 210 0.5 MDAIDSAVDPLREFSKDSVRLVKRCHKPDRKEYTKVAFRTATGFVVMGFVGFFVKLIFIPINNIIVGSG* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0109 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Vvi17g0109 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
Vvi17g0109 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Vvi17g0109 69 PANTHER SEC61 GAMMA SUBUNIT 1 68 - -
Vvi17g0109 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Vvi17g0109 69 SUPERFAMILY Preprotein translocase SecE subunit 4 65 IPR023391 -
Vvi17g0109 69 NCBIfam protein translocase SEC61 complex subunit gamma 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Vvi17g0109 69 FunFam Transport protein Sec61 subunit gamma 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0109 Vvi-Chr17 938976 939343 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0109 K07342 - vvi:100256046 127.872