Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0103 ATGGAGAGAGGAAGAGGAGGTGGTGTCGCTCTTCTCAGTGAAGATCTTCTTCAGAACATTCTCTCCAGACTCCCAGCCTTATCCTTTGCAAACGCGGGGTGCGTTAGCCGCTCCTGGCGCCGCGCCGCCGGTGACGTTCTCTCTCGCCCTAAGCTCGCCTCTGCAATCTCTCTCAATCCTTCTTTTCAGGATGCTGTAAAGGAGGTTCTGGATTCAGTTCTTTCCAGGCCTATTCGTCCTCATTTCGCTATTGCTTGCATTGGCCTCAAGTTCAGCCTGGAACGCACTCACAAACTCATTACGAAGAAATTGGGCTCTGCTACTCCGGTGATTACTTCTGTTGCTCGTGGAATCATTGGTAGTGATGCGATTACTGAGGAATTCAAGGAGGTGAAGTGGGGAGTTGACGTTGAAGATTTTAATTTACCAGCAAATAAAGATCGAGGCATTGTTTTGATTGTTGGTTTTATGCCGGGATTGAAAGTTGATGCAATCCCTCTGTTGCGAGAATTGGAGGAACCTGGCATTTCCCTTATCGACAAGTTTGTGATGGATATTAGGAATTTTTCTGCTGCTGTTTCGGGTTGCACTTCTCCGACTGGAATTGTAATGTTTGGGGATAAACACGCTGACATGAAACCCGTTCTCGAGAAGATGGATTATGCCATGTCTATGGAAACTGTCATTTTGGGTGAAGAGAGTGGACATTTTATGTATAGAAGTGGGGATGATTCTAGAAACATCAGTGGGAGTCTAAAAAACTCTTGTGATGGTGTTGCTCTTGTATTTGCTAGGGACAATGATAAGCCTCAAGGTGTAGGTGAAACTCAATTCCATGTTGCTTTGTCAACTGGTGTAGTACCTGTTGGTCCCACACACAAGGCGGCTTCCGTTAAAGTGAAAGGCGATGGATCTGAGCGTTCTACATGGCTCACTGCAAGAAAAGAAGGCCTCAAAGAGGCCCTTGATGGTGAAAGACTTCTACATGATATTTATGATGAGATGGAAAATGAGAATGCTTCTCATGACTTGTACATTGGGGTTACGAAAAGAAGAAAGTGTTCCATTGGGTCTGAGAAGGTGAGAGGAGATGAAGAGTACCTCTTTGTTGACGGCGTTGGCATCAAAACTGGTGATCCCTTTCGTTTCTACCGTTCCGATTCTGATACTGCTTTGTCTTCTTGTCGCCATGTCTCTGAAGAGTTCAGAAATCTAAAGCAAGCCTGGACCCACAAAAACAGCTATCATTTTAGGGGTGTTGCTGATGGTGGCGACAAGACAGAAGTGTGTGGAGGTATCATCTTCTCCTGCTATGGCCGCGGTGACTCATTCTTCGGACAAGCAAATGTTGATAGCTCCCCCTTCTTGGAGAACTTTCCTGGGTTTCCCTTAGCAGGGATAATGTGCGGCGGGGAAATTGGGCGTGTCCATTTGAGCTCTGCAGATCATCAAGGTGGTCAGGAAGAAAGCTCCCCCCGCAGCTATCTACACTATTACAGCACTGTTTACCTGGTGATATCCCATACTCCATCGTCTCTGGAGAGTTAG 1548 0.4645 MERGRGGGVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKWGVDVEDFNLPANKDRGIVLIVGFMPGLKVDAIPLLRELEEPGISLIDKFVMDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGDDSRNISGSLKNSCDGVALVFARDNDKPQGVGETQFHVALSTGVVPVGPTHKAASVKVKGDGSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTHKNSYHFRGVADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPLAGIMCGGEIGRVHLSSADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLES* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0103 515 SMART FIST_C_2 321 476 IPR019494 -
Vvi17g0103 515 Pfam F-box domain 12 44 IPR001810 GO:0005515
Vvi17g0103 515 SUPERFAMILY F-box domain 9 45 IPR036047 GO:0005515
Vvi17g0103 515 Pfam FIST C domain 374 475 IPR019494 -
Vvi17g0103 515 SMART fbox_2 12 52 IPR001810 GO:0005515
Vvi17g0103 515 Gene3D - 11 47 - -
Vvi17g0103 515 PANTHER F-BOX ONLY PROTEIN 22 9 510 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0103 - - vvi:100262924 1025.77