Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0089 ATGGGGGAGGAGGAAAAGAAGCCGGAGGAGAAGAAAATGGAGGGAAAGAAGGCGGAGGAAGAGAAGAAGGAAGAGAAGGCGGCGCCGGAGGAAGGGAAAGCAGCGAAGGCCGAGCCGCCTCCGCCTCCGCCGGAGATTGTGCTGAGAGTCTACATGCATTGTGAAGGCTGTGCTCGGAAAGTTCGCCGGTGTCTCAAGGGCTTTGACGGCGTTGAGGACGTTATCACCGATTGCAAGAGCCAGAAAGTGGTGGTGAAAGGAGAAAAGGCCGATCCATTGAAAGTTTTGGAGAGGGTTCAGAGGAAGAACCACAGACAAGTTGAGCTACTCTCTCCGATCCCGAAACCGCCGGCCGAGGATGAGAAGAAGCCGGAAGAGAAAGAAGCACCGAAACCGGAAGAAAAGAAGGAAGAGCCCCAGGTGATTACAGTGGTGCTCAAGGTTCATATGCATTGCGAGGCTTGCGCGCAAGAAATCCAAAAACGCATAGGGAGAATGAAAGGAGTGGAGTTCGCGGAACCAGATCTAAAGGCGTCTCAGGTGACGGTGAAGGGCGTGTTCGATCCGCCGAAGCTGGTGGAGTACGTGTACAAGAGAACTGGGAAGCACGCTGTGATCGTGAAGCAAGAGCCGGAGAAGAAAGAGGAGGAGAAGGGCAAAGACGGAAAGGAAGAGAAAAAGGAAGAAAAAGGAGAAGGCGAAAAAGAGAAGAAAGGTGGCGGGGAGGAAGAGAACAAAGGGAAAAAACCAGGAGAAGAAGCAGCGGCGGAGAAGGCAGACGTGGAAGCGGAGACGAAGGTGGTGGAGCTGAAGAAGAACGAGTTCCTGTACAATTACAATTACCCATATTACCCTCCCAGGTACTACATGGAGCAGAACCCATACCCCTCGCAGATCTTCAGCGACGAGAATCCTAACGCCTGCTCCGTCATGTAA 936 0.5299 MGEEEKKPEEKKMEGKKAEEEKKEEKAAPEEGKAAKAEPPPPPPEIVLRVYMHCEGCARKVRRCLKGFDGVEDVITDCKSQKVVVKGEKADPLKVLERVQRKNHRQVELLSPIPKPPAEDEKKPEEKEAPKPEEKKEEPQVITVVLKVHMHCEACAQEIQKRIGRMKGVEFAEPDLKASQVTVKGVFDPPKLVEYVYKRTGKHAVIVKQEPEKKEEEKGKDGKEEKKEEKGEGEKEKKGGGEEENKGKKPGEEAAAEKADVEAETKVVELKKNEFLYNYNYPYYPPRYYMEQNPYPSQIFSDENPNACSVM* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0089 311 FunFam Heavy metal transporting ATPase 140 206 - -
Vvi17g0089 311 CDD HMA 145 204 IPR006121 GO:0046872
Vvi17g0089 311 SUPERFAMILY HMA, heavy metal-associated domain 139 210 IPR036163 GO:0046872
Vvi17g0089 311 ProSiteProfiles Heavy-metal-associated domain profile. 141 205 IPR006121 GO:0046872
Vvi17g0089 311 MobiDBLite consensus disorder prediction 208 263 - -
Vvi17g0089 311 SUPERFAMILY HMA, heavy metal-associated domain 47 103 IPR036163 GO:0046872
Vvi17g0089 311 Gene3D - 43 115 - -
Vvi17g0089 311 ProSiteProfiles Heavy-metal-associated domain profile. 43 107 IPR006121 GO:0046872
Vvi17g0089 311 Pfam Heavy-metal-associated domain 146 202 IPR006121 GO:0046872
Vvi17g0089 311 Pfam Heavy-metal-associated domain 48 101 IPR006121 GO:0046872
Vvi17g0089 311 MobiDBLite consensus disorder prediction 104 138 - -
Vvi17g0089 311 MobiDBLite consensus disorder prediction 1 33 - -
Vvi17g0089 311 MobiDBLite consensus disorder prediction 115 138 - -
Vvi17g0089 311 MobiDBLite consensus disorder prediction 1 43 - -
Vvi17g0089 311 Gene3D - 138 207 - -
Vvi17g0089 311 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 17 311 IPR044577 GO:0046872
Vvi17g0089 311 CDD HMA 52 108 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0089 Vvi-Chr17 784461 785792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0089 - - vvi:100249014 395.586