Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0088 ATGGAAACCCTCATGAATCTTCTCCAGGAAACAGCTCTGAATTATGTTTCCAGCTCTGGGTTGGCCGGGAATGGCTTCGGAACAACCCGGGAGATGAGCCTTAGGAAACTGATTCGGGTGGTGACCCATACACATTCAAGTAGAGAAGTACATTTCTGGGAAGATGTTGTGGAGATCGATACTTGGCTTGATGCAGCAGGAAAGAATGGAGTTCGCCGGGATTGGATAATTAGAGATTGTAATACTCAAAAGATCATAACAAGAGCTACAGGCACATGGGTGATTATGAACAGCGAAACAAGAAGGCTGTGTAAGATCCCTGAGCAAGTTAGGGAAGAGATACAACCATTCTACCTGAATAGATTTGCCATGGCTGCAGCCCAGAACCACAATGAAAAAATTGAAAAGCTCACTGATGAAACTGCATGCTGGAAGAATCCGATCCGGATTAGCTCCAAGATGGAGCGACATGGATGCCAACCTCCACGCCATCAATGTCGGATCTGCTGGAGTCCTTGGCAAGCATGA 528 0.464 METLMNLLQETALNYVSSSGLAGNGFGTTREMSLRKLIRVVTHTHSSREVHFWEDVVEIDTWLDAAGKNGVRRDWIIRDCNTQKIITRATGTWVIMNSETRRLCKIPEQVREEIQPFYLNRFAMAAAQNHNEKIEKLTDETACWKNPIRISSKMERHGCQPPRHQCRICWSPWQA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0088 175 Gene3D Hotdog Thioesterase 1 158 - -
Vvi17g0088 175 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 2 121 IPR029069 -
Vvi17g0088 175 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 142 IPR045023 GO:0006633|GO:0016297
Vvi17g0088 175 Pfam Acyl-ACP thioesterase 1 136 IPR002864 GO:0006633|GO:0016790
Vvi17g0088 175 Coils Coil 120 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0088 Vvi-Chr17 769392 770298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0088 1 144 Acyl Lipid Metabolism Gene Families AT1G08510 51.034 6.11e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0088 K10781 - vvi:100254336 239.195