Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0087 ATGGCATCAATGGCAGCAACCAGCAAAATGGGCTTACACTTTTCAGAGGATTTACGTAAAAAAAAGCTGAATAAGAATGTGGGTTTGGCCAAGAAATTGTTGAAGGTGGAGTACTACTGCTCTCCGATGATCAGGAAGGAGAACCTGTTGAGAAGAAAACTATCTGTGGTAGCAAATAGTACTGGTTACCGGGCGGCGCAGACCGACATGATCAATGGAAAAAAGTTGAATGGGATTCATGCGGGGAAGATGATCAGCAGTACGGATGCATGCATGCTGGGAAAGTTTGTGGAGGAAAGGTTTGTTTACAGACAGACCTTTGTGATAAGGTCTTATGAGATTGGTCCAGACAAAACGGCCACCATGGAAACCCTCATGAATCTTCTCCAGGAGACAGCTCTGAATCATGTTTCCAGCTCTGGGTTGGCCGGGAATGGCTTCGGAGCAACCAGGGAGATGAGCCTCAGGAAACTGATTTGGGTGGTGACCCGCATACACATTCAAGTAGAGAAGTACAGTTCCTGGGGAGATGTTGTGGAGATCGATACTTGGGTTGATGCAGCCGGAAAGAATGGAATGCGTCGAGACTGGATAATTAGAGACTGTAACACTCAAAAGATCATAACAAGAGCTACAAGCACATGGGTGATTATGAACAGAGAAACAAGAAGGCTGTGTAAGATCCCTGAGCAAGTTAGGGAAGAGGTACAACCATTCTATCTGAATAGACTTGCCATAGCTGCTGCAGCCCAGAACCACAATGAAAAAATTGACAAGCTCACTGATGAAACTGCTGGCAGAATCCGATCCGGCTTAGCTCCAAGATGGAGCGACATGGATGCCAACCTCCATGTCAACAATGTCAAATACATTGGATGGATCTTGGAGAGTGTGCCGGTAGATGTGTTGGAGCATTACAATCTCACGAGTATGACGCTTGAGTATCGACGGGAGTGTCGACAATCGGATCTGCTGGAGTCCTTGACAAGCATGAAAGCAAAGGTGAGTGAAGAGTCGAGCAACAAGTCAAGAGATTTGTTGAGCACACACCTGCTTCGCATGGATGATGATAAGGCCGAAATAATCCGAGCAAGATCAGAGTGGCAGTCCAAACAACAACACTAG 1125 0.4631 MASMAATSKMGLHFSEDLRKKKLNKNVGLAKKLLKVEYYCSPMIRKENLLRRKLSVVANSTGYRAAQTDMINGKKLNGIHAGKMISSTDACMLGKFVEERFVYRQTFVIRSYEIGPDKTATMETLMNLLQETALNHVSSSGLAGNGFGATREMSLRKLIWVVTRIHIQVEKYSSWGDVVEIDTWVDAAGKNGMRRDWIIRDCNTQKIITRATSTWVIMNRETRRLCKIPEQVREEVQPFYLNRLAIAAAAQNHNEKIDKLTDETAGRIRSGLAPRWSDMDANLHVNNVKYIGWILESVPVDVLEHYNLTSMTLEYRRECRQSDLLESLTSMKAKVSEESSNKSRDLLSTHLLRMDDDKAEIIRARSEWQSKQQH* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0087 374 FunFam Acyl-[acyl-carrier-protein] hydrolase 175 374 - -
Vvi17g0087 374 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 70 372 IPR045023 GO:0006633|GO:0016297
Vvi17g0087 374 FunFam Acyl-[acyl-carrier-protein] hydrolase 95 174 - -
Vvi17g0087 374 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 271 368 IPR029069 -
Vvi17g0087 374 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 97 244 IPR029069 -
Vvi17g0087 374 Gene3D Hotdog Thioesterase 94 374 - -
Vvi17g0087 374 Pfam Acyl-ACP thioesterase 102 369 IPR002864 GO:0006633|GO:0016790
Vvi17g0087 374 CDD 4HBT 103 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0087 Vvi-Chr17 759890 761931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0087 89 371 Acyl Lipid Metabolism Gene Families AT1G08510 55.124 1.24e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0087 K10781 - vvi:100254336 744.962