Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0086 ATGGGCCGTCTCTGGACTTTGGCCACTCATCTTCACTCACTAGCTGGGCCTGTGACAATGTTGCTGTACCCCTTATATGCATCAGTAATGGCAATAGAGAGCACAACAAAAGTGGATGATGAGCAGTGGCTGGCCTACTGGATCTTATACTCATTTCTCACCCTCATGGAGATGCTTCTCCAACCCATTTTAAAATGGATACCCATATGGTATGATGTGAAGCTGGTGTTTGTGGCATGGCTGGTCCTCCCGCAGTTCAGAGGAGCAGCCTTCATATATGAGAAGTTCGTGAGAGAGCAAATCTGGAAACATGGACGAGCAGGACGAGCAGAAAACAGGGCCTCCACCAGCCATCATCATGGCAAGGGCGATAGCAAGTCTGTGCAGTTCGTTGGTCTTAAGAAGGGACCGCATGAAGCTTATTGA 426 0.4883 MGRLWTLATHLHSLAGPVTMLLYPLYASVMAIESTTKVDDEQWLAYWILYSFLTLMEMLLQPILKWIPIWYDVKLVFVAWLVLPQFRGAAFIYEKFVREQIWKHGRAGRAENRASTSHHHGKGDSKSVQFVGLKKGPHEAY* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0086 141 Pfam TB2/DP1, HVA22 family 24 99 IPR004345 -
Vvi17g0086 141 PANTHER HVA22-LIKE PROTEINS 4 117 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0086 Vvi-Chr17 756790 757895 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0086 K17279 - vvi:100243863 296.975