Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0084 ATGGATATAATACACAGCTTCCTGAACCTAGTGGCGCCACCCTTTACCTTTGTCGCTCTCTTCCTCTTGTTACCACCATTTCACTTCTTTAAGTTCTTCCTCTCCACCTTCTGGTCTATACTAAGTGAAAACGTCACCGGAAAAAGGTTGTCATCGTCACCGGCGCTTCCTCCGGCATCGGGGAGCATGTGGCCGCGTGCGCTGGGCGCCCCTGATGTCCGTGTGGTTCCTGCCGATGTTTCAAAGCTGGAGGACTGTAAGCGGATTGTTGATGAAGCTGCTAATCACTTTGGGCGAGTGGATCATCTAGTAAATAACGCTGGGATCCAGTCAGCCAGCACGCTTGAAGAAGCCACAGATATCACTAATTTCAGACCAGTTATGGATGTGAACTTCTGGGGTTCAGTTTACACCACCCGTTTTGCAATTCCACACCTCAGAAACAGCCACGGCAAGATCATTGGCATGGCTTCTTCTGCTGCATGGCTGCCCATGCCACGAATGAGCATCTACAATGCCAGCAAAGCAGCATTAATAAGCTTCTACGACACATTGAGGATTGAACTCGGGTCCGACATCGGAGGAATAACAGTTGTGACTCCTGGGTTTATAGAATCTGAAATGACTCAAGGAGAATTCCTAAAGAATGAAGACCAAATAGAAGTGGATCAAGACATGAGAGATGCTCAAGTGAGCATAATCCCAGTTGGCAGGGCAGAAGCATGTGCCAAGGCAATTGTAAAGAGCGCTTGCAGGGGAGAGAAATACCTGACGGAGCCATCGTGGTTCAGGGTCACCTACTTGTGGAAGGTGTTGTGCCCTGAGGTGATCGAGTGGTGTTTCCGGTTGTTCTATCTTGCTAGGCCAGGGGAATCGGAAACACTCAGCAAGAAGATCCTGGACATCTCTGGGGCTCGTGGGTTTCTGTATCCAACCACAATCCAAACAACTGATGTCAAAGCAGATTAA 969 0.4892 MDIIHSFLNLVAPPFTFVALFLLLPPFHFFKFFLSTFWSILSENVTGKRLSSSPALPPASGSMWPRALGAPDVRVVPADVSKLEDCKRIVDEAANHFGRVDHLVNNAGIQSASTLEEATDITNFRPVMDVNFWGSVYTTRFAIPHLRNSHGKIIGMASSAAWLPMPRMSIYNASKAALISFYDTLRIELGSDIGGITVVTPGFIESEMTQGEFLKNEDQIEVDQDMRDAQVSIIPVGRAEACAKAIVKSACRGEKYLTEPSWFRVTYLWKVLCPEVIEWCFRLFYLARPGESETLSKKILDISGARGFLYPTTIQTTDVKAD* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0084 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Vvi17g0084 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 IPR002347 -
Vvi17g0084 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Vvi17g0084 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 67 285 IPR036291 -
Vvi17g0084 322 Pfam short chain dehydrogenase 71 212 IPR002347 -
Vvi17g0084 322 Gene3D - 62 287 - -
Vvi17g0084 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Vvi17g0084 322 PANTHER RETINOL DEHYDROGENASE-RELATED 67 289 - -
Vvi17g0084 322 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Vvi17g0084 322 PRINTS Glucose/ribitol dehydrogenase family signature 98 109 IPR002347 -
Vvi17g0084 322 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Vvi17g0084 322 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0084 Vvi-Chr17 746952 748821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0084 78 238 Acyl Lipid Metabolism Gene Families AT1G24360 30.864 5.19e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0084 K22418 - vvi:100260981 560.451