Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0083 ATGAATTTCATTCACAAGGTCCTCAACATTGCGCTTCATTCTATGGGCCTCATAACACTTCTCTTCTTCCTACTTTCATTCCTGTCCTTCAATTCCCTTTTCTTTATCCTAAGATCCCTACTCAGCGAAGATGTGGCCGGAAAAGTTGTACTCATCACAGGAGCATCTTCAGGCATTGGAGAGCACCTGGCTTACCAGTATGCGAGAAGAGGTGCTTGTTTAGTCCTTGTTGCCAGAAAGGAGAAGAGTATCCAAGAAGTTGCAGACAGGGCTCGTAGCTTGGGCTCCCCTGAGGTTTTAGTGATCCGTGCAGATGTTTCCAAGGTTGAAGTTTGCAAGAGTTTTGTTGATGAAGCAGTGGAACACTTCCGACGATTAGATCATTTGGTGAATAATGCTGGGATTACTCCAGTCCGTATGTTCAAAGATTCCACCGATATCACTAATTTCGTACCAGTAATGGACAAACTTCTGGGGATCAATTTGTAG 489 0.4417 MNFIHKVLNIALHSMGLITLLFFLLSFLSFNSLFFILRSLLSEDVAGKVVLITGASSGIGEHLAYQYARRGACLVLVARKEKSIQEVADRARSLGSPEVLVIRADVSKVEVCKSFVDEAVEHFRRLDHLVNNAGITPVRMFKDSTDITNFVPVMDKLLGINL* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0083 162 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 145 IPR036291 -
Vvi17g0083 162 PANTHER RETINOL DEHYDROGENASE-RELATED 46 155 - -
Vvi17g0083 162 Gene3D - 36 162 - -
Vvi17g0083 162 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vvi17g0083 162 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vvi17g0083 162 Pfam short chain dehydrogenase 48 146 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0083 Vvi-Chr17 744205 746348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0083 45 131 Acyl Lipid Metabolism Gene Families AT3G12800 35.632 1.32e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0083 K22418 - ming:122077000 186.422