Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0080 ATGGACGATGAGTACGCAAAGCTTATCAGGAGAATGAACCCACCAAGAGTGGTCATTGACAATGATTCTTGTGGGCATGCCACAGTTATAGAGGTTGATAGTGCCAATAGGCATGGAATTCTCCTTCAAGTTGTTCAAGTTCTTACAGACCTCAACCTCATAATAACGAAAGCTTACATCTCTTCTGATGGAGGATGGTTCATGGATGTGTTCAATGTGACTGACCATGATGGAAACAAACTCAGAGATGAAGAGATCCTCAATTACTTACAAAAAACTCTTGAAACTGAAGCCGGTTTCTTGAATTCATTGAGAGGCTCAGTTGGGGTAATGCCTTCTAAGGAGGATACCTCCATTGAACTAACTGGCAGCGACAGACCCGGGTTGCTGTCGGAGGTGTCTGCAGTGCTGACAGACCTGAGATGCAACGTGGTAAACGCTGAGATCTGGACACACAACGCTAGAGCAGCAGCTGTTATTCATGTTACAGACCAGGCAACTGGGTGTGCGATAGAAGACCCAAAACGTCTCTCAATGATTAAGAAACGGCTCGGCAATGTCTTCAAAGGCAACAGCAGTTTCAGGACACCCAAAATGACCATATCTTCACCTGGGCCTGTGGCAATGAACAGAGATAGAAGACTGCATCAGATGATGTTTGCTGCTAGGGATTTCGAAAGGCTGGAATATGTCCAGGACAAAAACTCAAGGCCCCATGTCACTGTCTTGGATTGCAGTGATAGAGATTACACCGTTGTTACCATTAGGTCCAGAGACAGGCCAAAGCTATTATTTGATACTGTGTGTGCTCTAACAGATATGCAGTATGTTGTGTTCCATGGAACTGTCATCACAGGAAGAATGGAAGCTTATCAGGAACACTACATCAGACATGTGGATGGGCTCCCTTTACGTTCAGAAGCCGAGCGGCAACGTGTCACAGAGTGTCTTGAAGCCGCGATTGAAAGGCGAGCCTGGGAGGTAATCCAATCCCTTAACAAAACCCTAATTGGATTATGCATATTTTTCATCATCTTAAGAGAAAAATCATTGGTATCTTGCAGGGACTGGTGCTGGAACTCAGCACAGAAGACCGGTTCGGCCTGCTCTCAGACGTTACAAGGGTTTTCCGGGAGAATGGTTTGTGCATCAAGCGAGCAGTAA 1164 0.457 MDDEYAKLIRRMNPPRVVIDNDSCGHATVIEVDSANRHGILLQVVQVLTDLNLIITKAYISSDGGWFMDVFNVTDHDGNKLRDEEILNYLQKTLETEAGFLNSLRGSVGVMPSKEDTSIELTGSDRPGLLSEVSAVLTDLRCNVVNAEIWTHNARAAAVIHVTDQATGCAIEDPKRLSMIKKRLGNVFKGNSSFRTPKMTISSPGPVAMNRDRRLHQMMFAARDFERLEYVQDKNSRPHVTVLDCSDRDYTVVTIRSRDRPKLLFDTVCALTDMQYVVFHGTVITGRMEAYQEHYIRHVDGLPLRSEAERQRVTECLEAAIERRAWEVIQSLNKTLIGLCIFFIILREKSLVSCRDWCWNSAQKTGSACSQTLQGFSGRMVCASSEQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0080 387 CDD ACT_ACR_3 250 324 - -
Vvi17g0080 387 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 329 IPR040217 -
Vvi17g0080 387 SUPERFAMILY ACT-like 24 95 IPR045865 -
Vvi17g0080 387 ProSiteProfiles ACT domain profile. 29 106 IPR002912 -
Vvi17g0080 387 SUPERFAMILY ACT-like 114 187 IPR045865 -
Vvi17g0080 387 CDD ACT_ACR_2 117 190 - -
Vvi17g0080 387 Pfam ACT domain 28 86 IPR002912 -
Vvi17g0080 387 Pfam ACT domain 117 165 IPR002912 -
Vvi17g0080 387 Gene3D - 116 193 - -
Vvi17g0080 387 ProSiteProfiles ACT domain profile. 118 202 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0080 Vvi-Chr17 723812 725574 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0080 - - vvi:100256112 657.136