Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0079 ATGGAGAGCACACCGGACCCGAGTTCAAAACTGACTCGCCACGACGAACCAGAGCTCGACCTCTACACCATCCCAATCCATTCAAGTTGGTTCTCTTGGGACGAAATCCACGAAAAAGAGAAGATCTCCCTCAAAGAGTTCTTCGATGGAAGTTCAATCTCGAGAACACCGAAGATATACAAAGAGTACAGAGACTTCATCATCTCTAAGTACAGAGAAGACCCGTCGAGGAGGCTTACCTTCGCGGAGATTCGTAAATCACTGGTGGGTGACGTTAGTTTGCTCCACAAGGTCTTTCTCTTCTTGGAGAGGTGGGGGTTGATCAATTTCGGTGCACCTGGGGGTGAGGATTCGGCGGCGGTGGCGGAGGGTGCCGAGAGGCACAGAGTGAGGTCCGAGGATGGAGCTCCGAATGGAATTCGGGTCGTGGCAATGCCCAATTCGTTGAAGCCCATCACAATGCCGCTGACTTTGGATGTGAATGGTGAAGTGGATGAGAATGGATTTAGATTGCCGCCATTGGCTTCCTATTCGGATGTTTTCAGTGATTTGACTAAGGAGAAAGGATTGGTTTGTGGGAACTGCGGGGATAATTGTGATTCCGGACATTACAACTGCTTGAAGCAGGGGAGTCCTGTAATTTGTGTGAAATGCTTCAAGAATGGAAATTACGGGGAGAACCGATCTGTTGATGATTTCAAGTTTAATGATTGCAATGAAAACAGAGGCAATCGAGGAGCTGTTTGGACTGAGGCAGAAACTTTACTTCTTTTGGAATCAGTTTTAAAGCATGGAGACGACTGGGAGCTTGTTGTTCAAAATGTTCAAACCAAGACAAAACTTGATTGTATTTCAAAGCTCATAGAGCTGCCATTTGGGGAGCTTATGTTGGGTTCTTCCCTAGGTAAATCTAGGGCCAGCAATGACAATACAAGCAGTATCAAACCAGTTCAGACTTCATTAGAGTCCCAAGAGAATATAAAAAATGGGGGTCAAGGAGATGAGCAGATAAATGAGAGTGAGCAAAATGGAGACGCTGAGAACCAAGGCCCTCCTTTGAAGCGAAAATGCATTACTTCACTTTCTGATGCTGGCATCTCACTGATGAGACAGGTAGCTGTCATCTCAACCATGGTTGGCCCACATATCTCAGCTGCTGCGGCTGATGCTGCTGTTGCAGCACTCTGTGATGAAAACCCATGTGTGAAGGATATTTTTGATGGTGCAGAGGATAATGTAACAGAAGAGTTAGGCTCCCCCATTCGGAATAACAAGCTGGAGAGATCACTTATGGTTGAAGATTCAGAGATAAATGAAAGGCCCATTCTATCAGAAATTCAGAAGACATCCTCTGAGAAGAATGCCATACCTCTACCTTTGCAAATGAGGGCTGCAATTGCAACAGCCCTTGGAGCAGCTGCTGCGAATGCCAAATCATTGGCAGATCAGGAGCACAGAGAGATAGAACATTTAGTGGCAACCATAATTGAAACACAGATGAAGAAACTTCACTGCAAAATCCAGCATTTTGAAGACTTGGAGCTGATAATGGAGAAGGAATACACCCACCTAAAGGAACTGAAAGAGTCTATCATAGCAGAGCGGATTGATATCTTGCAAAGGGTATTTAATGCTGGAATATCTAGATGGAGGGATCCTATTTCTGTAAAATCTCATACTGGCTCCCCCATACTGGTATGCGACCTTACTGATGCTCGCTGA 1722 0.4553 MESTPDPSSKLTRHDEPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKIYKEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGAPGGEDSAAVAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASYSDVFSDLTKEKGLVCGNCGDNCDSGHYNCLKQGSPVICVKCFKNGNYGENRSVDDFKFNDCNENRGNRGAVWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGELMLGSSLGKSRASNDNTSSIKPVQTSLESQENIKNGGQGDEQINESEQNGDAENQGPPLKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAEDNVTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIATALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESIIAERIDILQRVFNAGISRWRDPISVKSHTGSPILVCDLTDAR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0079 573 Gene3D - 245 293 - -
Vvi17g0079 573 PANTHER SWI/SNF COMPLEX-RELATED 14 540 - -
Vvi17g0079 573 SUPERFAMILY Homeodomain-like 245 294 IPR009057 -
Vvi17g0079 573 Pfam SWIRM domain 26 110 IPR007526 GO:0005515
Vvi17g0079 573 CDD SANT 249 286 IPR001005 -
Vvi17g0079 573 ProSiteProfiles SANT domain profile. 244 295 IPR017884 -
Vvi17g0079 573 FunFam SWI/SNF complex subunit SMARCC2 isoform c 28 115 - -
Vvi17g0079 573 Pfam Myb-like DNA-binding domain 249 287 IPR001005 -
Vvi17g0079 573 SUPERFAMILY Homeodomain-like 21 112 IPR009057 -
Vvi17g0079 573 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515
Vvi17g0079 573 Pfam SWIRM-associated region 1 468 543 IPR032451 -
Vvi17g0079 573 MobiDBLite consensus disorder prediction 303 355 - -
Vvi17g0079 573 Gene3D - 28 113 IPR036388 -
Vvi17g0079 573 MobiDBLite consensus disorder prediction 303 347 - -
Vvi17g0079 573 SMART sant 245 293 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0079 Vvi-Chr17 717777 722900 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0079 K11649 - vvi:100250960 1097.42