Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0077 ATGGCGACTGAAACCCTAGCGGATACGAAGGTAGAGGATGGGCTGGGGGGCAAGGAAGAGGTGAGAGAAGAGAGGGAGCAGAGTGAGGCGGAGGAGAAGAAGGAGAAGGAAGGCGAGGATTTTCCGGAGAAATCTGTTTCTCGGGAGAACGAGGAAAACGAAGGAAAGGAAGAGGAAGGTGATGTGAAGGAAGACGAGAGTAAGGAGGAAAAGGTTGAGAGCAAGAAAGGGAAACGAAGTAGGAAGCAGGGCTCAAAGAGAGGCCAGCGCGAGGGGAAGAAATCGGGGCAAGAATCGGCGGCCAAGAAAGCGAAGGCTTCGAGTCGTAAAGAACCTGTTACGCCAAATGAGAGGCCTACAAGGGAGAGGAAAACGGTTGAACGGTACTCGGAACCGTTACCGGGACGAGCCTCTGCGAGCAAGGGATTGTCAATTGAGAAGGGCACTGGCACACAGCTTAAGGATATCCCCAATGTGGCTTTCAAGCTGTCAAAGAAAAAACCTGATGAAAACTTGCAGACACTTCACACAATTCTTTTTGGGAAGAAAGCCAAGATACATACTTTGAAAAGGAATATAGGCCAATTTTCTGGCTATGTATGGGTTGAGAATGAGGAGGAAAAGCAGAAGGCAAAAGTAAAGGAGAAACTTGACAAATGCATTAAAGAAAAATTAGTGGATTTCTGTGATGTGCTGAATATTCCAATAAACAAAGCCATTGTTAGAAAGGAAGAACTCTCTGCAAAGTTACTGGAATTTTTGGAATCCCCACATGCTACAACTGATGTTTTGCTTGCTGATAAGGAACAGAAGGGAAAAATTCGCAAGAGGAAGGTAACACCAAGCAAAAGCACTAGTCCTGGAGAGACGTCTATGGAAAAGCCAGCCAAGAAACGAAAACAAACTTCAGTTGGGGATAAGCAAAGGCCTTCATCTGAAGTGGAGGGAGAAGATGAAGTTGAAGCTTCAGCGAGCAGAGATGATTCAGATGAAGTGGAGGACAATGATACAGCTATGAAAGAACAGAGTGATCAAGAGGAGACTAAATCTGAGGAAGAGGAAGAGGAGAAGAAGGAACAGAAAACAACTAAAAAAGCTTCATCTAGAAAGAGTGTAAAGGAGGATTCAGGGGCTAAACACAGGGGCAAGAAGGCCTCTGCTTCAAGATCTGTGAAAAGCCCTGCAAAATTGACAAAAAAATCTTCTAGTTCAACTTCCAAAAAAGCTGATGCTGATGATACTTCTGTTGCTCCTAAATCCAAGGAATCTTCAGCTAAAAAGAGAAAGGCTGAAAAGGAAAGCCAGAAGGATCAAAGTGATCCTGCCAAGGAAAAAACTGCTAGTAAAAAACGATCAAGCAGGGCGACAGAAAAGGTTTCATCAAAGGATCTAGGAAAAGGCAAAACTAGCAAGAAGGCAAAGCCAGAACCCAGCAGAGAAGAAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTGCAACTTTATCAGATATTCTCAGGCAACTTGGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTATAATTACAGATGTAATAAACAGCATGAGTGATGATGAAGATGAAGAGGAGGAAGCCGAGGAAAACGCTGAAGCTGGAAATGATGCAGATGACAAGGATGGGGAAGGAGACGGGGATGGAGATGGGGATGATGAGGCTTAG 1713 0.4431 MATETLADTKVEDGLGGKEEVREEREQSEAEEKKEKEGEDFPEKSVSRENEENEGKEEEGDVKEDESKEEKVESKKGKRSRKQGSKRGQREGKKSGQESAAKKAKASSRKEPVTPNERPTRERKTVERYSEPLPGRASASKGLSIEKGTGTQLKDIPNVAFKLSKKKPDENLQTLHTILFGKKAKIHTLKRNIGQFSGYVWVENEEEKQKAKVKEKLDKCIKEKLVDFCDVLNIPINKAIVRKEELSAKLLEFLESPHATTDVLLADKEQKGKIRKRKVTPSKSTSPGETSMEKPAKKRKQTSVGDKQRPSSEVEGEDEVEASASRDDSDEVEDNDTAMKEQSDQEETKSEEEEEEKKEQKTTKKASSRKSVKEDSGAKHRGKKASASRSVKSPAKLTKKSSSSTSKKADADDTSVAPKSKESSAKKRKAEKESQKDQSDPAKEKTASKKRSSRATEKVSSKDLGKGKTSKKAKPEPSREEMHAVVVDILKQVDFNTATLSDILRQLGTHFDLDLMHRKTEVKAIITDVINSMSDDEDEEEEAEENAEAGNDADDKDGEGDGDGDGDDEA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0077 570 MobiDBLite consensus disorder prediction 354 382 - -
Vvi17g0077 570 Pfam DEK C terminal domain 477 529 IPR014876 -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 61 77 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 1 148 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 264 481 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 89 130 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 403 481 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 11 53 - -
Vvi17g0077 570 Coils Coil 533 553 - -
Vvi17g0077 570 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 476 531 IPR014876 -
Vvi17g0077 570 Gene3D - 469 532 - -
Vvi17g0077 570 Coils Coil 203 223 - -
Vvi17g0077 570 Coils Coil 335 370 - -
Vvi17g0077 570 Coils Coil 48 68 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 531 570 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 292 316 - -
Vvi17g0077 570 SUPERFAMILY DEK C-terminal domain 470 531 - -
Vvi17g0077 570 MobiDBLite consensus disorder prediction 532 570 - -
Vvi17g0077 570 Coils Coil 18 38 - -
Vvi17g0077 570 PANTHER DEK PROTEIN 4 548 IPR044198 GO:0003677|GO:0006325
Vvi17g0077 570 MobiDBLite consensus disorder prediction 317 335 - -
Vvi17g0077 570 FunFam DEK domain-containing chromatin associated protein 468 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0077 Vvi-Chr17 701297 707292 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0077 K17046 - vvi:100245819 814.298