Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0072 ATGGAGGATGCTCGGGTGAAGCAAGAAATCGTAGAATTTGCGCAAGCTTTGCAGCCAAATCGGAACGACGACGTTTCGAAATCGGTTCCTCTGATTGAACTCAGTAGCAGCGATTCGTCCGATTCCAGCGACTCCTCCGATTCCGACGACGATGACGCAACCGTTTCCGGTCGCAAGAGATTTAGGGTTTCTAGCGGTCTCGAAGGAGTTCTGTCGAAAAAGAAGAAGTTGGATGGATTAGGAATTGTTTTGCCGCTCGGATTTCTTGATCCTCTGCCGCCCGAGGAACCGCCGGCGCTGGTGCCGAAGGCGGTGACCTCGCCGACAGCAGTTGCCCAGCGGTCATCTACTGCGAATAGGAATTTGGTTGAGCAAAGCTGCAAGCTATTTTGGAAAGCTGGAGAGTATGAAGGAGCTCCGGGTGGCGATTTCGATTCATCCGCTGGTGGCTTGGATCATGTCAGGGTTCACCCCAAGTTCCTACACTCCAATGCCACCAGTCATAAATGGGCTCTTGGAGCTTTTGCAGAGCTTTTGGACAATTCACTGGATGAGATCTGCAACGGAGCCACTTATGTTAATGTAGATATGCTTGAAAATAAGAAAGATGGGAACAGAATGTTGCTGATTGAAGATAATGGAGGTGGGATGGATCCAGAGAAAATGCGACAATGCATGTCTCTTGGGTATTCTGCAAAAAGCAAAATAGCAAACACCATTGGTCAATATGGAAATGGTTTTAAGACGAGTACCATGAGGCTTGGAGCAGATGTTATTGTGTTCTCACGTTGTTGTGGAAAGGATGGAAAAAGCCCCACACAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGGAAGGAAGATATTGTAGTTCCCATGATTGACTATGAGAAAGGAGGGCGGGAATGGAACAAGATGATAAGATCATCTGCCAGTGATTGGAATAAGAACGTGGAAACAATAATGCAGTGGTCTCCATTTTCAAGTGAATTGGATCTTCTTCGACAGTTCAATTTTATAAAAGAACATGGTACACGTATAATCATATACAACCTTTGGGAGGATGACCCTGGGCAGTTGGAGCTTGATTTTGACACTGATCCCAAAGATATTCAAATTAGAGGTGTCAACCGAGATGAGAAGAATATCCAAATGGCAAAACAGTTTCCAAACTCCAGGCACTTTTTGACTTACCGACATTCATTAAGGAGTTATGCATCAATTTTGTATCTTAGACTTCCACCTGGCTTCAGAATTATTCTTCGTGGGAAAGATGTTGAGCACCACAATGTAGTAAATGATATGATGATGACACAGGAGGTTACATACCGACCACAACCTAGTGCTGACGGGGTCCCTAAGGATTTGAATATGGTTGCTGTTGTGACTATTGGATTCGTGAAGGATGCAAAGCACCATATTGATGTTCAAGGATTTAATGTCTATCACAAGAATCGACTTATTAAGCCCTTTTGGAGGCTTTGGAATGCTGCAGGAAGTGATGGCCGAGGAGTAATAGGCGTATTGGAGGCTAATTTTGTTGAACCAGCTCATGATAAGCAGGGGTTTGAGCGTACAATAGTTCTTTCAAGGCTTGAGACACGATTGCTACAAATGCAAAAGACATACTGGACCACATATTGTCATAAAATTGGCTATGCTCCTCGGCGTAACAAGAAATTAATCAATGAATCTGCTAGAGAAACATCTCCTGATTATCTTCCCCAAACACCTTCACAACCTAAAAAGAAGGTTGGTGCCTCAAGTGGCAAGACTCCACTTTCAAATTTAGACAAGCATGCTTCACACTCAAATCATAAGCAGGGAGGGAGAGAATTGGAAAGAACTCCAGAAACAGTTTACCAGAGTCATGGAAATGGACATGCATCCAGTAAGCAGGAAAAGAGAACACATATGCCCACAAGACCTAGAAAAGAGCAAAGTTCTTTGGTGCCATCATCACCTTCTGCAGAGGATGTTGATGATGATGACGTGCCAGCTGTTCTACCTGAGAGAGAAGCAAATGGTAGAGTTCATAAGGCATCACATGCTAATAATTCTTTTGGAGAAGACGGGCATCAAATCTCTACACGTTCACAGTCAAAGGGAGATGATGTTAATGGAAACTCCAATTCCCTTGCATTAGAACAGTTAAGAGAAGAAAATTGTGAGCTAAAGGAAAGATTAAAGAGAAAGGAGGGTGATACAGTAGTTGCCTTGCGGGGTGATTTGGAGAAAGAAAGAGAGAAGTGTAAATTACTTGAAACTGAGCTCCAGGAGGCAAGACAGAAAATTGAGGACATGAACAAAGAGCAGGACAGTCTAATTGATATATTCTCAGAGGAGAGGGACCGACGAGACATTGAGGAGGAAAACCTGAGAAAGAAATTAAGGGAAGCATCTAATACCATCCAAGAGTTGCTTGAGAGGGTGAGGGTGCTGGAGAAGATGAAGACCCCTAATGGCAAATCAGAACGTCGCTAA 2493 0.438 MEDARVKQEIVEFAQALQPNRNDDVSKSVPLIELSSSDSSDSSDSSDSDDDDATVSGRKRFRVSSGLEGVLSKKKKLDGLGIVLPLGFLDPLPPEEPPALVPKAVTSPTAVAQRSSTANRNLVEQSCKLFWKAGEYEGAPGGDFDSSAGGLDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEICNGATYVNVDMLENKKDGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKIANTIGQYGNGFKTSTMRLGADVIVFSRCCGKDGKSPTQSIGLLSYTFLRSTGKEDIVVPMIDYEKGGREWNKMIRSSASDWNKNVETIMQWSPFSSELDLLRQFNFIKEHGTRIIIYNLWEDDPGQLELDFDTDPKDIQIRGVNRDEKNIQMAKQFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGKDVEHHNVVNDMMMTQEVTYRPQPSADGVPKDLNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTIVLSRLETRLLQMQKTYWTTYCHKIGYAPRRNKKLINESARETSPDYLPQTPSQPKKKVGASSGKTPLSNLDKHASHSNHKQGGRELERTPETVYQSHGNGHASSKQEKRTHMPTRPRKEQSSLVPSSPSAEDVDDDDVPAVLPEREANGRVHKASHANNSFGEDGHQISTRSQSKGDDVNGNSNSLALEQLREENCELKERLKRKEGDTVVALRGDLEKEREKCKLLETELQEARQKIEDMNKEQDSLIDIFSEERDRRDIEEENLRKKLREASNTIQELLERVRVLEKMKTPNGKSERR* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0072 830 MobiDBLite consensus disorder prediction 603 621 - -
Vvi17g0072 830 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 173 376 IPR036890 -
Vvi17g0072 830 MobiDBLite consensus disorder prediction 632 646 - -
Vvi17g0072 830 MobiDBLite consensus disorder prediction 18 57 - -
Vvi17g0072 830 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 66 804 IPR045261 GO:0016887
Vvi17g0072 830 MobiDBLite consensus disorder prediction 690 716 - -
Vvi17g0072 830 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 173 269 - -
Vvi17g0072 830 FunFam MORC family CW-type zinc finger protein 4 157 361 - -
Vvi17g0072 830 Gene3D - 159 362 IPR036890 -
Vvi17g0072 830 Pfam Morc6 ribosomal protein S5 domain 2-like 403 547 IPR041006 -
Vvi17g0072 830 MobiDBLite consensus disorder prediction 572 602 - -
Vvi17g0072 830 Coils Coil 793 820 - -
Vvi17g0072 830 Coils Coil 740 781 - -
Vvi17g0072 830 MobiDBLite consensus disorder prediction 569 716 - -
Vvi17g0072 830 Coils Coil 718 738 - -
Vvi17g0072 830 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0072 Vvi-Chr17 605080 637111 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0072 - - vvi:100266246 1586.62