Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0070 ATGGCGAGCGTATCTGGAGGAGTGGCTCTCTCATGCCCATCAAGGCTCTCTCACAGATCCTCTTCTTCATCTCATCGCCGCCATGTCTCTTCTTCTTCCGTCAAAATGGCAGTTTCAGTTGATGAGAAGAAGAAGAGTTTCACTCTTCGAAAATCTGAAGAGGCCTTCGAAATCGCTAAGGAGTTGATGCCTGGTGGTGTGAATTCACCTGTTCGTGCCTTCAAATCAGTTGGTGGACAGCCTATTTTGTTTGATTCTGTCAAGGGCTCTCACATGTGGGACATAGATGGCAATGAATACATTGACTACGTTGGTTCATGGGGGCCAGCAATCATTGGTCATGCTGATGATGAGGTACTGGCAGCCTTGGCTGAAACAATGAAGAAAGGAACAAGCTTTGGTGCCCCTTGTCTTCTGGAGAATATTCTGGCCGAGATGGTTATATCTGCTGTTCCAAGCATAGAGATGGTTCGCTTTGTTAACTCGGGTACTGAAGCATGCATGGGCATGCTCCGCCTAGCCCGTGCCTTCACTGGCAAGGAGAAAATCATAAAGTTTGAGGGTTGCTACCATGGCCATGCTGATCCATTCCTTGTCAAGGCAGGCAGTGGAGTTGCAACCCTGGGGCTACCTGACTCACCTGGTGTTCCCAGGGCAGCCACCTTTGAAACTCTAACATCACCCTTCAATGACTTATCAACTGTGGAAAAACTCTTCGAGGCGAATAAAGGAGAGATTGCAGCAGTCATCCTTGAACCTGTTGTTGGAAACTCTGGCTTCATAGCTCCCAAACCTGACTTCCTGAATGCTCTCCAAGAAATCACCAAAGAAAATGGTGCTCTCCTTGTCTTTGATGAAGTTATGACAGGTTTCCGCATATCTTATGGTGGTGCCCAGGAATACTTTGGCATTACACCTGATATAACAACACTTGGAAAGATCATTGGTGGTGGCCTGCCTGTTGGTGCATATGGAGGAAGGAGGGAGATCATGGAGTTGGTGGCACCAGCAGGCCCAATGTACCAGGCAGGAACCTTGAGTGGGAACCCATTGGCAATGACAGCAGGCATCCAAACACTAAAGCGGTTGAAGGAGCCAGGATCATACGAATACTTGGATAAAATCACTGGTGAACTTATTCAGGGCATTTTGGATGCTGGAAAAAAGGCTGGGCATGCCATATGTGGTGGATATATTAGTGGGATGTTTGGGTTTTTCTTCACAGAGGGACCTGTTTACAACTTTGGGGATGCAAAGAATAGTGATACAGCAAAATTTGCAAGGTTTTTTAGGGGAATGCTGGAGGAAGGTGTTTACTTTGCACCTTCCCAGTTTGAGGCTGGGTTTACTAGCTTGGCACATACGCCTGAAGATATCCAACAAACGATAGCAGCAGCTGAGAAGGTTTTCCGGAAAATTTAG 1422 0.4705 MASVSGGVALSCPSRLSHRSSSSSHRRHVSSSSVKMAVSVDEKKKSFTLRKSEEAFEIAKELMPGGVNSPVRAFKSVGGQPILFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENILAEMVISAVPSIEMVRFVNSGTEACMGMLRLARAFTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPRAATFETLTSPFNDLSTVEKLFEANKGEIAAVILEPVVGNSGFIAPKPDFLNALQEITKENGALLVFDEVMTGFRISYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRREIMELVAPAGPMYQAGTLSGNPLAMTAGIQTLKRLKEPGSYEYLDKITGELIQGILDAGKKAGHAICGGYISGMFGFFFTEGPVYNFGDAKNSDTAKFARFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQQTIAAAEKVFRKI* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0070 473 MobiDBLite consensus disorder prediction 1 37 - -
Vvi17g0070 473 Pfam Aminotransferase class-III 82 393 IPR005814 GO:0008483|GO:0030170
Vvi17g0070 473 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 282 318 IPR005814 GO:0008483|GO:0030170
Vvi17g0070 473 NCBIfam glutamate-1-semialdehyde 2,1-aminomutase 51 472 IPR004639 GO:0033014|GO:0042286
Vvi17g0070 473 CDD OAT_like 56 470 IPR005814 GO:0008483|GO:0030170
Vvi17g0070 473 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 32 472 - -
Vvi17g0070 473 FunFam Glutamate-1-semialdehyde 2,1-aminomutase 117 365 - -
Vvi17g0070 473 SUPERFAMILY PLP-dependent transferases 50 472 IPR015424 -
Vvi17g0070 473 Gene3D - 117 365 IPR015421 GO:0003824
Vvi17g0070 473 Gene3D Aspartate Aminotransferase, domain 1 54 466 IPR015422 GO:0003824
Vvi17g0070 473 FunFam Glutamate-1-semialdehyde 2,1-aminomutase 360 466 - -
Vvi17g0070 473 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 51 473 IPR004639 GO:0033014|GO:0042286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0070 Vvi-Chr17 592949 596681 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0070 K01845 - vvi:100250737 891.723