Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0069 ATGAGTTCGGATTTGGTTGATATAAAGTTTAGGCTGTACGATGGATCTGATGTTGGACCCTTTCGGTACTCATCCACCTCCACGGTCGATATGCTCAAGGAGAGAGTTGTCTCTGATTGGCCGAAAGGTAAAACCATTATACCGAAGGCTGCAAATGAAGTTAAACTGATTAGTTCTGGTAAAATTTTGGAAAATGACAAGACTGTTGGTCAGTGTAGAATACCCTTTGGTGAACTTGCAGGAGGGGTTCTTGTAATGCACGTTGTTGTACAACCATCTCTAGCAAAAACAAAGACAGAAAAGAAGATTGATAAGTCACCCAAGAAAGTTGTCTGCTCATGTTCCATATTATGA 354 0.4068 MSSDLVDIKFRLYDGSDVGPFRYSSTSTVDMLKERVVSDWPKGKTIIPKAANEVKLISSGKILENDKTVGQCRIPFGELAGGVLVMHVVVQPSLAKTKTEKKIDKSPKKVVCSCSIL* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0069 117 PIRSF MUB 1 117 IPR017000 -
Vvi17g0069 117 ProSiteProfiles Ubiquitin domain profile. 6 74 IPR000626 GO:0005515
Vvi17g0069 117 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 3 116 IPR040015 -
Vvi17g0069 117 SUPERFAMILY Ubiquitin-like 2 96 IPR029071 -
Vvi17g0069 117 Gene3D - 1 99 - -
Vvi17g0069 117 CDD Ubl_MUBs_plant 5 92 - -
Vvi17g0069 117 Pfam Ubiquitin-2 like Rad60 SUMO-like 5 115 IPR039540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0069 Vvi-Chr17 588893 591668 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0069 - - vvi:100245604 233.802