Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0068 ATGAAGAGGAGGAGAGATGAGGCGGCGGAGATGGAGATTGTGTGGCAGACCCCAGCGAACCCGCCGGAGCGCCATGATTACATATTCCGCAATGGGAAACGCCACGTCAGACCTTACTACTTCGAGTTCATCTCTCATGTTAAGAATCGTTGGGCGGGAAAAACCATCGTCGATTTGTTCACCGAAGAGTTCAAAGGACGGCCTTATGATTATTATGTTAATGCTGTCCAATCGGGAAGGATACAAGTTGATGGAGAGATGGTGCCTGTTTCGTACATAGTCCGATCATCGCAAAAGATAAGCCACTTTGTACACAGGCATGAACCGCCAGTGTTGGCGTTGGATGTCTCAGTTTTGCAGAAAGAACCAGATGTTTTAACCATTTGTAAGCCAGCATCTGTTCCGGTGCATCCATGTGGTCAATACCGTAAAAACACTGTTGTCGGCATCCTTCAGGCGGAGCATGGCTTGGCACCTCTATTTCCGATCCATAGGCTAGACCGCCTAGTTTCAGGACTCCTGATCTTGGCCAGAAGTGCTTCTAAGGCTGACAGTTTTAGGCAACAGATTGAAGCTGGGATGGTGCAGAAACAGTATATTGCAAAGGTCACTGGGGTATTTCCTGATGATGAGCAAGTTGTCAATGTGAATGTAAATTATAATGCTCGGGAAGGAAGAAGCACAGTAGAGGTTGGCAACTGTTGTGGCAATACTCCCTTGAAGGGAAAGTCAGCATGTACAAAGTTTACTAGGATTAGTACCAATGGAACTCATAGCATTGTTTTGTGTGAACCAATCACTGGTCGAACTCATCAAATTCGAGTTCATTTACAATATACAGGCCATCCAATAGCCAATGATATGCTCTACCTCTCCGAATTTTCTGTTGATCGTTCTACTAAAGGATTGAGTGCTGATAGAGCTGCAGCTAATTCAGGCTGTTCTCTGCCATCCAGTTCTCCCAAAAGTTGTGTTGACGAATATTGTGATGATAATTCCACCGTAGATTTCAGCATTGATCCTATGTGTACAAATTGTCCAAATTTGACCCCTAAAGGATATGATGAGGATGAAGAGGGTTTATGGTTACACTGCATTAGATACTGCGGGCCTGATTGGGTTTATGAATGCCCACATCCAGAGTGGGCATCGCATGACTAA 1161 0.4505 MKRRRDEAAEMEIVWQTPANPPERHDYIFRNGKRHVRPYYFEFISHVKNRWAGKTIVDLFTEEFKGRPYDYYVNAVQSGRIQVDGEMVPVSYIVRSSQKISHFVHRHEPPVLALDVSVLQKEPDVLTICKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARSASKADSFRQQIEAGMVQKQYIAKVTGVFPDDEQVVNVNVNYNAREGRSTVEVGNCCGNTPLKGKSACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGHPIANDMLYLSEFSVDRSTKGLSADRAAANSGCSLPSSSPKSCVDEYCDDNSTVDFSIDPMCTNCPNLTPKGYDEDEEGLWLHCIRYCGPDWVYECPHPEWASHD* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0068 386 ProSitePatterns Rlu family of pseudouridine synthase signature. 163 177 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi17g0068 386 SUPERFAMILY Pseudouridine synthase 108 382 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi17g0068 386 CDD PseudoU_synth_ScRIB2 101 384 - -
Vvi17g0068 386 NCBIfam RluA family pseudouridine synthase 50 293 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi17g0068 386 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 33 384 - -
Vvi17g0068 386 FunFam Pseudouridine synthase 112 369 - -
Vvi17g0068 386 Gene3D Pseudouridine synthase 116 316 - -
Vvi17g0068 386 Pfam RNA pseudouridylate synthase 125 278 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0068 K15454 - vvi:100255954 798.119