Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0062 ATGGATGATTTTCCTCATCACTTGGGAATATCAATAATGGTTGTTGTAATCGCATTCACATTATATATCTTAGTTCTTCTTCTGCTAACCTCTGGAAGAGATCCTGGCATAATACCTCGCAATGCACACCCTCCAGAGCCAGAAGGTTATGATGGTACTGAAGTTGGGGCTGGCCAAACTCCACAGTTGCGTTTGCCTCGAACGAAGGATGTGGTTGTGAATGGAATAACTGTGAAGGTCAAATACTGCGATACCTGCATGCTTTATAGACCTCCTCGCTGTTCACACTGTTCAATATGCAATAATTGTGTGGAACGATTTGACCATCACTGCCCTTGGGTTGGTCAATGTATTGGACTGCGAAATTACAGGTTCTTCTTCATGTTTGTCTTCTCCACAACTCTTCTGTGCGTGTATGTATTTGGATTTTGCTGGGTCTACATCATGAGGATCATGGATGGCAAGGAAACCACAATTTGGAAAGCAATGGCCAAGACTCCTGCCTCCATTGTGCTAATAGTTTACACTTTCGTAGCAGTATGGTTTGTGGGGGGGCTTTCTGTCTTCCATTTGTATCTCATCAGTACAAACCAGTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTCCTTCATCCAAGAATAATTTCAGGGCAAAAGTGCCAAAGGAGCCTGAAATTCCAGCTCGGACAGTAGGTGGTGGTTTTGTTAGTCCGATCCTGGGGAAAGACGCAGCTGACATAGAGATGGGGAGGAAGCCATTTTGGGATGAGGCTGCGGCAGAAGCAGGTGAATATGAAAGACAGCTCAGCAATGATGATGGTGTGGACAAGGATGGGGAATTCACTGATGTGTCCCCATATTCAAGCAGAGCACTTCATGCAGAGGGCACGGAGGGGCCTGGTGCCTTGCATCACAGGCGTTCTAGCTGGGGAAGAGCAAGTGGAAGCTGGGATATATCACCTGAAGTTATTGCAATGGTAGCTGAAGTTGGAAGCGCAAATCGAGTCAGTGGTGGCAGCACAAGCAGCGAGTCAGTGGTGGCAGCACAAGCAGCTTGA 1125 0.4631 MDDFPHHLGISIMVVVIAFTLYILVLLLLTSGRDPGIIPRNAHPPEPEGYDGTEVGAGQTPQLRLPRTKDVVVNGITVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCVYVFGFCWVYIMRIMDGKETTIWKAMAKTPASIVLIVYTFVAVWFVGGLSVFHLYLISTNQSTYENFRYRYDRRANPYNKGVIENFMEIFCTSIPSSKNNFRAKVPKEPEIPARTVGGGFVSPILGKDAADIEMGRKPFWDEAAAEAGEYERQLSNDDGVDKDGEFTDVSPYSSRALHAEGTEGPGALHHRRSSWGRASGSWDISPEVIAMVAEVGSANRVSGGSTSSESVVAAQAA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0062 374 Pfam DHHC palmitoyltransferase 80 205 IPR001594 GO:0016409
Vvi17g0062 374 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 16 241 - -
Vvi17g0062 374 ProSiteProfiles DHHC domain profile. 81 131 - -
Vvi17g0062 374 MobiDBLite consensus disorder prediction 285 302 - -
Vvi17g0062 374 MobiDBLite consensus disorder prediction 285 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0062 Vvi-Chr17 515636 519444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0062 12 243 Lipid Metabolism Gene Families AT4G22750 28.049 1.32e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0062 - - vvi:100262775 746.117