Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0056 ATGGCGACGCCGAAGGAGCATATAGAGGAGATAAGGAGGACGAAGTTCTCGATCGGAGGAGAGCAGAATCCGCTGACGGAGGATCTTCACCAGGCGGTGAAGAATCTCTCTGCTGAGCTTTACGCTAAGGATGTTCATTTCCTCATGGAACTCATTCAGAATGCAGAAGATAACGAATATGGGGAAGACGTAAATCCGTCGTTGGAGCTCGTTATAACTTCAAAGGACATAACTGGCACTAGAGCACTAATGACGTTGTTGATTTTCAACAACGAAAAGGGATTTTCAGCTAAAAATATTGAGTCTATCTGCGGTGTTGGGAGGTCCACCAAGAAAGGCAACAGGAAGCGCGGTTATATTGGAGAGAAAGGAATTGGATTCAAGAGTGTATTTTTGATCACAGCTCAGCCTTACATATTCAGTAATGGATATCAGATACGATTCAATGAAGAGCCTTGCCCGCACAGCAATCTTGGGTACATTGTCCCTGAATGGGTTGAGCAGAATCCAAGTCTTGATGACATAAAACAAATATATGGTTCTCATGCAGTCCTTCCAACCACTACCATAATCTTGCCTCTAAAGCCTGACAAGATCAAGCCTGTGAAGGAACAGCTCTCAAGTATTCAACCTGAAGTTCTATTATTTCTTTCAAAGATTAAGCACTTTTCTGTCAAGGAAGATAATGAGGATCCAAGGCTCAATACTGTGAATGCCATCTCTATTTCAAGTGAAATTAACTTTGTTACAAGGAAGAATATTGATGCTGATTCCTATACTCTCCATCTCTCTGCGGATGAAACTAGTGATGTGACTGAAAAAGAATGCAGCTACTATATGTGGAGGCAGAAGTTCCCTGTCAGGCAGGAAAATCAAGTAGAAAGAAGACTTGAAGTGGAGGAGTGGGTTATTACGCTGGCATTTCCACTTGGACAGCGACTGAATAGGGGGATGAGCTCTCCTGGAGTCTATGCATTTCTTCCCACGGAGATGGTTACAAATTTTCCCTTCATTATTCAGGCAGATTTTGTTCTTGCATCATCCAGGGAAACAATCCTCTTGGACAACAAATGGAACCAAGGCATTCTCGATTGTGTGCCTTCTGCTTTTCTTAATGCCCTTATTTCACTGGTTACAACATCAGAAGATGTTCCAGTTTCTACACTGACCCCAATGTTTAAGTTCTTACCTATTGACAGCTCTTCTTATCCAAAGCTCAATGTCGTGAGGGAGTCTATCAAAGCAAAACTGCTCAAGGAGAATATCATACCATGTGAGTCGTATTCAGACCAGAAGATCTTTCGTAAACCTTGTGAAGTGGGTAGGTTAATGCCTTCTTTCTGGAATATCCTCAAAAAGGCAAGGAATCAAGGGGTAAGCTTGGATTCTCTGTCATCCCATGGAAGCTATATCCTGAATTCTTCATTTGATACAGAGGAGTACGATCACATATTGAATTTCCTTGGTGTGAAACCTGTCAATAGCGAATGGTATGCCACGTGTATCAGGAGTTCCAATCTTCTCTTGGGAGTGACAGAGGATGATTATTTGGAACTTCTACTCTTTATTGCTGAGAAATGGAGTTCCTCTTTCCACAGCACGGACATGAGGAATGTTCCTCTCCTGAAATATGTTGGTCCTGATGGAAATGTTGTTTTGTGCCCTACAAGCAATGTCTCAATGTGGAATGGTGGAAGTATGATTTGTATGTCCCGTGAGTCTCAGCATATTTCATGGTTGATAGACTGGAACAGGGAATTTAGACGTGTGACAGATCGATATTTTATGCCCAAAAGCACACAAGAAGCTATCAAAGTTTTTTCTAAGAGAGAGACTCTGTTGGAATGGCTTCAAAATCAAGTGAAGGTTCGCGTTGTCAGTGTGTACGACTTTGCTGTCATTCTTTATAATTCTTTTAAGGGTGACCGACAGCTTGCTATTGCCTATGTTCACTTCCTTTATCATTCCCTCTCGAAGAGTTATCTACCAAAGGGGGATGTTGACAATTTGTGTCGTATCATGCCACTTGTAGATAACTATGGGCATGTGAGCACTCAGAGAAAAGGTGTTCTCGTTCCTGCTAACGGAAGCAAATGGGTGGGATTAATGGGTGCAAATCCGTGGAGGGGAGCAGGCTATGTTGAGCTGGGAGAAGACTATTTGCGCTCGGGCAGTTATGCAGGTTCATTCACACCAGAGATGCAGCTAATGACGTTTCTCAAAACTCATGTTGCAGCTTCTGATATACCTGATATATCTCCTCCCGACGCCGAGTTATCTGCCGCATATGCACCACTCACCAAGCAAAATGCATTCTTGCTGTTGGACTGGATTCACAACCTGAAATATAAGCAAGGTCTGCCAGCTAAGTTCCTGACATCCATTAAGATGGGAAGCTGGCTCAAAATTTCCCTCAGTGGCAGTCCTGGATATAGGCCACCATCACAGTCTTTCCTGCTTGCTTCATCAGATGAAAATCTTCTGCAGGATGAGTCAGTAATGGTTGATATTCCATTGATTGACCAAGGATTTTATGGAAATGGCATCAATAATTATAAGGAGGAGCTCAAAACTGTTGGAGTAAAGTTTGAATATGGCGAAGCAGCATCAAAGATGGAAGGTGGTTGA 2628 0.4266 MATPKEHIEEIRRTKFSIGGEQNPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNEYGEDVNPSLELVITSKDITGTRALMTLLIFNNEKGFSAKNIESICGVGRSTKKGNRKRGYIGEKGIGFKSVFLITAQPYIFSNGYQIRFNEEPCPHSNLGYIVPEWVEQNPSLDDIKQIYGSHAVLPTTTIILPLKPDKIKPVKEQLSSIQPEVLLFLSKIKHFSVKEDNEDPRLNTVNAISISSEINFVTRKNIDADSYTLHLSADETSDVTEKECSYYMWRQKFPVRQENQVERRLEVEEWVITLAFPLGQRLNRGMSSPGVYAFLPTEMVTNFPFIIQADFVLASSRETILLDNKWNQGILDCVPSAFLNALISLVTTSEDVPVSTLTPMFKFLPIDSSSYPKLNVVRESIKAKLLKENIIPCESYSDQKIFRKPCEVGRLMPSFWNILKKARNQGVSLDSLSSHGSYILNSSFDTEEYDHILNFLGVKPVNSEWYATCIRSSNLLLGVTEDDYLELLLFIAEKWSSSFHSTDMRNVPLLKYVGPDGNVVLCPTSNVSMWNGGSMICMSRESQHISWLIDWNREFRRVTDRYFMPKSTQEAIKVFSKRETLLEWLQNQVKVRVVSVYDFAVILYNSFKGDRQLAIAYVHFLYHSLSKSYLPKGDVDNLCRIMPLVDNYGHVSTQRKGVLVPANGSKWVGLMGANPWRGAGYVELGEDYLRSGSYAGSFTPEMQLMTFLKTHVAASDIPDISPPDAELSAAYAPLTKQNAFLLLDWIHNLKYKQGLPAKFLTSIKMGSWLKISLSGSPGYRPPSQSFLLASSDENLLQDESVMVDIPLIDQGFYGNGINNYKEELKTVGVKFEYGEAASKMEGG* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0056 875 PANTHER WU:FJ29H11 2 870 - -
Vvi17g0056 875 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 28 200 IPR036890 -
Vvi17g0056 875 Gene3D - 7 220 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0056 Vvi-Chr17 467822 476354 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0056 - - vvi:100247409 1748.79