Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0054 ATGGCAACGGCCTTGAACAGGACTCGACCTGTAGTATACGCATCCAGAAGTTATGCATCTGGACCAAAGCAGATGACAGTACGGGAAGCTTTGAATACTGCAATTGATGAAGAGATGTCTGCAGATCCTAAAGTTTTTTTGATGGGTGAAGAGGTTGGTGAATATCAAGGTGCCTACAAGATTTCCAAAGGGCTTTTGGACAAGTATGGTCCTGGGAGGGTTATTGATACTCCAATCACAGAGGCGGGCTTTGCCGGAATTGGAGTTGGTGCTGCTTACCATGGTCTTAAGCCTATCATAGAATTTATGACATTTAATTTCTCCTTGCAGGCAATTGACCATATAATTAATTCAGCTGCAAAGTCAAACTATATGTCTGCTGGTCAGATATCTGTGCCAATTGTTTTCAGAGGGCCAAATGGGGCTGCTGCAGGAGTTGGTGCCCAGCATTCTCAGTGCTTTGCAGCATGGTATGGTGCATGCCCTGGTTTGAAGGTGCTGGTTCCATATTCATCAGAGGACGCTCGGGGCCTGTTAAAAGCTGCTATAAGGGACCCTGACCCTGTTGTTTTCCTTGAAAACGAATTGCTATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAGATAGAGCGAGAAGGAAAGGATGTAACTATTGTCACTTACGCAAGGATGGTTGATTATTCTCTCCAGGCAGCTGAAATACTCGCAAAAGAAGGAATTAGTGCTGAGGTTATAAATCTTCGCTCAATCCGTCCCCTTGACAGATCGGCAATCAATGCTTCAGTCAGGAAAACTAGCAGACTGGTGACTGTTGAAGAGGGGTTCCCTCAACATGGTGTTGGCGCTGAGATCTGTATGTCTGTTATTGAGGAGAGCTTTGATTCTCTTGATGCACCTGTCGAAAGGATTGCAGGGGCAGATATTCCCATGCCTTATGCAGCAAATCTTGAGAGAATGGCTCTTCCACAGATTGATGATATCATTCGTGCGGCAAAGAGGACTTGCTACAGATCAGCTCCTAAGGCTGCAGCCGCTTAG 1077 0.4568 MATALNRTRPVVYASRSYASGPKQMTVREALNTAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLDKYGPGRVIDTPITEAGFAGIGVGAAYHGLKPIIEFMTFNFSLQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYGACPGLKVLVPYSSEDARGLLKAAIRDPDPVVFLENELLYGQSFPVSEEALDSSFSLPIGKAKIEREGKDVTIVTYARMVDYSLQAAEILAKEGISAEVINLRSIRPLDRSAINASVRKTSRLVTVEEGFPQHGVGAEICMSVIEESFDSLDAPVERIAGADIPMPYAANLERMALPQIDDIIRAAKRTCYRSAPKAAAA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0054 358 Pfam Transketolase, pyrimidine binding domain 24 199 IPR005475 -
Vvi17g0054 358 SMART Transket_pyr_3 25 200 IPR005475 -
Vvi17g0054 358 FunFam Pyruvate dehydrogenase E1 beta subunit 217 349 - -
Vvi17g0054 358 CDD TPP_PYR_E1-PDHc-beta_like 29 195 - -
Vvi17g0054 358 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 23 228 IPR029061 -
Vvi17g0054 358 PANTHER DEHYDROGENASE RELATED 20 350 IPR027110 GO:0004739|GO:0006086
Vvi17g0054 358 Pfam Transketolase, C-terminal domain 218 340 IPR033248 -
Vvi17g0054 358 FunFam Pyruvate dehydrogenase E1 component subunit beta 24 216 - -
Vvi17g0054 358 SUPERFAMILY TK C-terminal domain-like 213 347 IPR009014 GO:0003824
Vvi17g0054 358 Gene3D - 217 349 IPR009014 GO:0003824
Vvi17g0054 358 Gene3D - 24 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0054 Vvi-Chr17 443980 451657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0054 19 348 Acyl Lipid Metabolism Gene Families AT1G30120 40.606 2.72e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0054 K00162 - vvi:100247469 695.271