Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0042 ATGGCGGAGTTGCAGCCACCGGAGGGTCAGATCAACGGCGGAGCGGCGGCGGGGGTTTCGTCGGAGAATATTGGGGGGAAGCGACAGAGGAGGCCAAGCGTCCGATTGGGGGATATCGGGGATCAGCCGTACGATTCGCATGTGAATCGGCGGAGCAACAAGCAGTGGAAGCTTCCAATGGAGAGCGATGCCAAGTACAGGAAGGAGTCTGGGAATATAGGTAAGGCCTCAAAGACTCGGCCTTTGATGAATTTGAGCACTGGTGGGGGTGAGTTCAGCGAAGCCCTAGAGGGTGAGGATAAGGAGGGCAACTTGGATTCTGTTGCGATTGGGAGTTGGAAAGTGAAGGATTCGAAGAAGCGAGGCCCCGCGACGAAGCGGGTGAGATCGAATTGGGTCTCCAAGGTGGACGAAGGAGGTGGCGGGGGTGGCGGAGGCGGAGGCGGCGAAGGGGATGAGAAGTTCAGCGGAGGCGAAGACGTGGATGATGGGTTTAGGGATTTCGAAAACGAGGATTCTGATAGCCCATTGAAGGAGCAAAGCCCAATTCATTCTCTGGAGAACATGGCAGTTGACCATGGGAATGACAGGGAGGTCCTTGGGAGGGGGCGGTGTCAGTCCAGAGAAGATGGGGTTAGAGACTGGCTGAATGAATTGGGGTTAGGGCGGTATGCGCCGGTGTTTGAGATCCATGAGGTGGATGAGCAGGTATTGCCAATGTTGACATTGGAAGATCTCAAGGACATGGGAATAAATGCGGTTGGGTCGAGACGTAAAATGTACTGTGCAATTCAGAAGCTAAACAAGGGGTTTTCATGA 819 0.5458 MAELQPPEGQINGGAAAGVSSENIGGKRQRRPSVRLGDIGDQPYDSHVNRRSNKQWKLPMESDAKYRKESGNIGKASKTRPLMNLSTGGGEFSEALEGEDKEGNLDSVAIGSWKVKDSKKRGPATKRVRSNWVSKVDEGGGGGGGGGGGEGDEKFSGGEDVDDGFRDFENEDSDSPLKEQSPIHSLENMAVDHGNDREVLGRGRCQSREDGVRDWLNELGLGRYAPVFEIHEVDEQVLPMLTLEDLKDMGINAVGSRRKMYCAIQKLNKGFS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0042 272 Gene3D - 205 267 IPR013761 -
Vvi17g0042 272 CDD SAM_superfamily 212 266 - -
Vvi17g0042 272 SUPERFAMILY SAM/Pointed domain 209 268 IPR013761 -
Vvi17g0042 272 MobiDBLite consensus disorder prediction 116 180 - -
Vvi17g0042 272 PANTHER SCP160 201 270 - -
Vvi17g0042 272 MobiDBLite consensus disorder prediction 1 103 - -
Vvi17g0042 272 SMART SAM_4 204 270 IPR001660 GO:0005515
Vvi17g0042 272 MobiDBLite consensus disorder prediction 44 74 - -
Vvi17g0042 272 ProSiteProfiles SAM domain profile. 207 270 IPR001660 GO:0005515
Vvi17g0042 272 Pfam SAM domain (Sterile alpha motif) 209 267 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0042 Vvi-Chr17 333607 334551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0042 202 264 Glycosyltransferase AT3G07170 36.508 4.83e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0042 - - vvi:100245808 508.449