Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0041 ATGAGGCTCTTACAGTTTGGTTTAATACTCGCTTTAGCATCTGGATTTGCTGCAATTATCATATACATTAATGGACTTGCCAATATATATGAGAAGTCTCTGCTTTCGGATGAAGATTTAGGAGCATTGGAGTCTCTACAGAGTGGCTTCCAGAAGTGTGTGAGTTCAAATGGATTAGGTTTACAAGCTGCACGTGGTAGAGATTATTGCCAAGTTACAATAAAATTTCCTAGTGATACTGTCCCCAAATGGAAAGATCCCAAAACCGGAGAACTTGAAGGGTTATCATTTGATTTTAATCTCTGTGAAGCAGTGGCTACATGGGAGCAGGTGCGGAATAGTACCACAATACTCACCAAGGAGTTTATTGATGCTTTACCAAATGGATGGACAGATTATGCATGGCGTAGGATTAATAAGGGAATACTCCTCAACAACTGCAAGAATAAGACACTTTGCATGGAGAAACTTTCTCTGGTACTCCCTGAAACACCACCATATTTTCCACGGCAGTTTGATCGATGTGCAGTTATTGGTAACTCAGGAGATCTTCTGAAAACAAGGTTTGGGAAGGAAATAGATGGCTATGATGCTGTTATTAGAGAAAACGGTGCACCAATTGAGAACTATACAGCGTATGTGGGCAAGAAAAGTACATTCCGTCTTCTTAATAGAGGATCTGCAAAAGCTCTTGATAAAGTTGTAGAGTTAGATGAAACAAGAAAGGAGGCCTTAATCATCAAAACAACAGTTCATGACATTATGAACAAGATGATTCAGGAAGTTCCAATACATAATCCTGTATATCTCATGCTAGGTGCATCCTTTGGGTCAGCAGCAAAAGGAACTGGGCTCAAGGCTCTTGAGTTTGCTCTGTCTATTTGTGAATCAGTAGATATGTATGGCTTTACAGTGGATCCGGGTTATAAAGAATGGACCAGATATTTCTCAGAATCTCGTCAAGGGCATACTCCTCTGCACGGCAGGGCTTACTACCAGATGATGGAGTGTTTGGGTCTTATCAAAATCCATTCTCCTATGCGAGCTGATCCTAACCGGATCGTGACGTATGTACCAAGTCATAGTACAGTGACTGCTGCTAGAACTGCATCGGAGAAATTGTTGAGGAGGGTCGGGGCAGGATCTGGAGAACCACTGCATGCATGTTCAATTATTAAGAAGCAACTTCAAAGAGAGCCCATAGGCATTTCAAGCATTAGAAAGGCTGCTGTTGACCATAAAAATTTTGTGAAAGGTGCAACTATGTATCCCTTGGAGCACAGTCCTGGCCATGGTCTACTATGCACGGTGCCCAACTGA 1320 0.4189 MRLLQFGLILALASGFAAIIIYINGLANIYEKSLLSDEDLGALESLQSGFQKCVSSNGLGLQAARGRDYCQVTIKFPSDTVPKWKDPKTGELEGLSFDFNLCEAVATWEQVRNSTTILTKEFIDALPNGWTDYAWRRINKGILLNNCKNKTLCMEKLSLVLPETPPYFPRQFDRCAVIGNSGDLLKTRFGKEIDGYDAVIRENGAPIENYTAYVGKKSTFRLLNRGSAKALDKVVELDETRKEALIIKTTVHDIMNKMIQEVPIHNPVYLMLGASFGSAAKGTGLKALEFALSICESVDMYGFTVDPGYKEWTRYFSESRQGHTPLHGRAYYQMMECLGLIKIHSPMRADPNRIVTYVPSHSTVTAARTASEKLLRRVGAGSGEPLHACSIIKKQLQREPIGISSIRKAAVDHKNFVKGATMYPLEHSPGHGLLCTVPN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0041 439 PANTHER SIALYLTRANSFERASE-LIKE PROTEIN 2 1 438 - -
Vvi17g0041 439 Gene3D Glycosyl transferase family 29 98 345 IPR038578 -
Vvi17g0041 439 FunFam Glycosyl transferase family 29 protein 98 345 - -
Vvi17g0041 439 Pfam Glycosyltransferase family 29 (sialyltransferase) 163 239 IPR001675 GO:0006486|GO:0008373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0041 Vvi-Chr17 322993 329598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0041 14 438 Glycosyltransferase AT3G48820 77.176 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0041 - - vvi:100243999 889.412