Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0034 ATGGATTCTCTAACATGGAAAACCATCCCAATGGTTTCTGTTGTGTTCCAGCTCTGCTTTCTCTTGAAGGCTCACCCCTCTTTGTCTCATCCTGACAAGATTATCCAGCTTCCTGGACAACCCCAGGTGGGCTTTCAGCAGTTTTCTGGTTATGTCAGTCTGGATGACAAGAAGCAAAGAGCTCTCTTTTACTACTTTGTTGAAGCTGAATCAGACCCAGCTTCAAAACCACTGGTTTTGTGGTTGAATGGAGGCCCTGGCTGTTCTTCACTTGGGGTGGGGGCATTCTCTGAAAATGGACCTTTCAGACCAAATGGGGAGTTTCTGTTGAGGAATGAGTATAGCTGGAACAGAGAAGCAAATATGCTGTATCTAGAGACACCAGTAGGAGTGGGATTCTCTTATTCATCTGATACCCCTTATGTCACAGTGGATGATAAGATAACAGCCAGGGACAATCTTGCGTTCTTGCAGCGCTGGTTCCTCAAGTTTCCCCAATACAAGCATAGGGATTTGTTTATCACAGGGGAAAGTTATGCAGGCCACTATGTTCCCCAACTTGCAGAACTCATGATTCGGTTCAACAAAAAGGAGAAGTTGTTCAATTTGAAGGGAATTGCTCTGGGTAATCCGGTTCTAGAATTCGCCACTGACCTCAATTCAAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCGGATTCAACATACAGATTGTTCACTTCTGCCTGTAACTATTCTCGCTATGTGAGTGAATACTATAGAGACTCAGTTTCATCTGTTTGTTCAAGGGTGATGGCCCAAGTAAGCAGAGAAACCAGTAAATTTGTGGACAAGTATGATGTTACCCTTGACGTCTGCCTTTCATCAGTACTCTCACAATCCAAAGTCATTAGTCCCCAACAAGTTGCAGAGACGATAGACGTGTGCATAGACGATAAAACTGTGAATTATCTAAACCGAAAAGATGTGCAGAAGGCTCTCCATGCCAGGCTTGTTGGCATTCGCAGTTGGACCGTCTGCAGCGACATTCTGGATTATGAGCTCCTCAACCTGGAGATACCTACGATTTCCATTGTGGGATCACTCATCAAGGCTGGAATTCCAGTCTTGGTCTATAGGTAA 1125 0.4471 MDSLTWKTIPMVSVVFQLCFLLKAHPSLSHPDKIIQLPGQPQVGFQQFSGYVSLDDKKQRALFYYFVEAESDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLLRNEYSWNREANMLYLETPVGVGFSYSSDTPYVTVDDKITARDNLAFLQRWFLKFPQYKHRDLFITGESYAGHYVPQLAELMIRFNKKEKLFNLKGIALGNPVLEFATDLNSRAEYFWSHGLISDSTYRLFTSACNYSRYVSEYYRDSVSSVCSRVMAQVSRETSKFVDKYDVTLDVCLSSVLSQSKVISPQQVAETIDVCIDDKTVNYLNRKDVQKALHARLVGIRSWTVCSDILDYELLNLEIPTISIVGSLIKAGIPVLVYR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0034 374 SUPERFAMILY alpha/beta-Hydrolases 36 373 IPR029058 -
Vvi17g0034 374 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vvi17g0034 374 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vvi17g0034 374 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vvi17g0034 374 Gene3D alpha/beta hydrolase 29 289 IPR029058 -
Vvi17g0034 374 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 347 IPR001563 GO:0004185|GO:0006508
Vvi17g0034 374 Gene3D - 310 346 - -
Vvi17g0034 374 FunFam Carboxypeptidase 27 374 - -
Vvi17g0034 374 Pfam Serine carboxypeptidase 38 373 IPR001563 GO:0004185|GO:0006508
Vvi17g0034 374 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0034 Vvi-Chr17 261759 263701 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0034 K16297 - vvi:100247312 756.133