Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0031 ATGGCTAGGGCTCTGGTTCAGTCAACCAATATCTTTGCTTCAGTTGCTGATGGGAAGCATGGAAAGTTTCAAGGGTCTGAGAGAACCAAAAAGTCTGTCAAAATGATGTGTAATGTCCAAGCACCTGGATTGAGGATCAGAGGCTTCTCAGGATTGCGAGGAGCCAATGCTTTAGATAATTTGGTGAGATCAGGCCATGATTTCCATTCCAGAGTGGCAGCTGCTATTTCTGTTCGGGGAGGAAAGGCTAGTCGATGTGTAGCTAGAGCTATGTTTGAGCGCTTCACTGAGAAAGCAATTAAAGTTATTATGCTTGCACAAGAGGAAGCAAGAAGACTTGGTCACAATTTTGTTGGCACTGAGCAGATTCTGTTGGGTCTTATTGGGGAAGGCACTGGTATTGCTGCTAAGGTCCTTAAATCCATGGGAATCAATCTGAAAGATGCCCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGCAGTGGATTTGTTGCTGTCGAGATTCCATTTACGCCTCGAGCAAAGCGTGTTTTGGAACTTTCGCTGGAGGAAGCTCGGCAACTTGGCCATAACTATATTGGATCGGAGCACTTGCTTCTGGGACTACTTCGTGAAGGCGAAGGTGTAGCTGCCCGTGTTCTTGAGAATTTAGGTGCTGACCCTAGTAATATTCGCACTCAGGTCATTCGTATGGTGGGTGAGAGTACAGAAGCTGTTGGTGCTGGTGTTGGAGGAGGAACCACTGGCAATAAGATGCCAACGTTGGAGGAGTATGGTACCAATTTAACAAAGCTGGCAGAGGAGGGTAAATTGGACCCTGTTGTTGGAAGGCAGCAACAAATAGAGCGTGTAACCCAAATTTTGGGTCGACGGACTAAAAATAACCCATGCCTCATTGGAGAACCTGGCGTTGGAAAAACAGCAATTGCAGAAGGCCTTGCACAAAGAATTGCAAATGGTGATGTTCCAGAAACGATTGAGGGGAAGAAGGTTATAACATTGGATATGGGTCTCCTTGTTGCTGGAACAAAATATCGCGGAGAGTTTGAGGAAAGATTGAAGAAGCTAATGGAAGAAATCAAACAAAGTGATGAGATAATACTCTTCATTGATGAGGTACACACCTTAATTGGAGCAGGAGCAGCAGAGGGGGCGATTGATGCTGCTAACATCTTGAAGCCAGCTCTTGCAAGGGGTGAACTGCAGTGTATCGGAGCCACAACACTGGATGAATACAGGAAGCACATTGAGAAAGACCCTGCCTTGGAAAGGAGATTCCAGCCAGTCAAAGTGCCTGAACCATCTGTGGATGAAACCATACAAATTTTGAAAGGGCTTCGGGAGCGGTATGAGATCCATCACAAGCTCCGGTATACGGATGAAGCTTTGGTATCTGCTGCCCGACTGTCATACCAGTACATTAGTGATCGATTTCTTCCTGATAAGGCAATTGACTTGATCGACGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGCTTCCAGAGGAAGCAAGAGAGCTTGAGAAAGAGCTCAGACAGATCACTAAAGAGAAGAATGAAGCAGTACGAAGCCAAGATTTTGAGAAGGCCGGTGAATTACGTGATAGAGAAATGGATCTAAAGGCACAGATCTCAACCCTCATAGACAAAGGCAAGGAGATGACCAAGGCAGAGACTGAGGCAGGAGATATAGGTCCTATGGTGACAGAAGTGGACATTCAGCACATTGTATCTGCTTGGACTGGCATCCCTGTTGAGAAAGTGTCAACTGATGAATCTGATCGTCTCCTCAAGATGGAGGAGACCCTCCACAGACGAGTCATTGGTCAGGATGAAGCTGTTAAAGCCATCAGCCGTGCTATTCGCCGAGCTCGTGTTGGACTCAAGAATCCCAACCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTAGGAAAGTCAGAATTGGCAAAAGCACTAGCTGCTTACTATTTTGGTTCTGAAGAAGCCATGATCCGTCTTGATATGAGTGAGTTCATGGAGAGACACACAGTCTCCAAACTGATTGGTTCACCTCCTGGTTATGTTGGTTATACTGAGGGTGGTCAGTTGACTGAGGCTGTTAGACGCCGACCTTATACAGTGGTTCTCTTTGATGAAATTGAGAAGGCTCACCCTGATGTCTTCAACATGATGCTTCAGATTCTTGAGGATGGCAGGTTGACAGACAGCAAGGGCCGAACTGTGGACTTCAAGAATACTCTTTTGATAATGACATCCAATGTTGGAAGCAGTGTGATCGAGAAGGGAGGCCGCAGGATAGGATTTGATCTCGATTACGATGAAAAGGATAGCAGTTACAACCGAATTAAGAGCTTGGTGACAGAGGAACTGAAACAATATTTCAGGCCAGAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGACAGCTCACTAAGCTGGAGGTGAAGGACATTGCTGATATAATGCTGAAGGAGGTGTTTGAAAGGCTGAAGGCCAAGGACATAGAACTTCAGGTGACCGAGAGGTTTAGAGATAGAGTGGTGGATGAAGGGTACAACCCCAGTTATGGTGCAAGGCCACTGAGAAGAGCCATAATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCAAGGGAAATCAAAGAAGGCGATTCGGTAATTGTGGATGTTGATTCTGATGGAAATGTCACTGTGCTCAATGGCAGCAGTGGTGCTCCACCTGAGTCATTACCAGAGGCAATGCCTGTGTAA 2772 0.4618 MARALVQSTNIFASVADGKHGKFQGSERTKKSVKMMCNVQAPGLRIRGFSGLRGANALDNLVRSGHDFHSRVAAAISVRGGKASRCVARAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAARLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISTLIDKGKEMTKAETEAGDIGPMVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHRRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKDIADIMLKEVFERLKAKDIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPPESLPEAMPV* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0031 923 PANTHER ATP-DEPENDENT CLP PROTEASE 96 902 - -
Vvi17g0031 923 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Vvi17g0031 923 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Vvi17g0031 923 Coils Coil 346 366 - -
Vvi17g0031 923 Gene3D - 815 910 - -
Vvi17g0031 923 Gene3D - 246 435 IPR027417 -
Vvi17g0031 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524
Vvi17g0031 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524
Vvi17g0031 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524
Vvi17g0031 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524
Vvi17g0031 923 Gene3D - 91 239 IPR036628 -
Vvi17g0031 923 SMART ClpB_D2_small_2 815 905 IPR019489 -
Vvi17g0031 923 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Vvi17g0031 923 Gene3D UVR domain 501 559 - -
Vvi17g0031 923 Pfam AAA lid domain 435 536 IPR041546 -
Vvi17g0031 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 530 IPR027417 -
Vvi17g0031 923 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Vvi17g0031 923 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Vvi17g0031 923 SMART AAA_5 292 432 IPR003593 GO:0016887
Vvi17g0031 923 SMART AAA_5 635 816 IPR003593 GO:0016887
Vvi17g0031 923 FunFam Chaperone clpB 1, putative 243 435 - -
Vvi17g0031 923 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524|GO:0016887
Vvi17g0031 923 FunFam ATP-dependent chaperone ClpB 815 907 - -
Vvi17g0031 923 Coils Coil 498 525 - -
Vvi17g0031 923 Gene3D - 437 581 - -
Vvi17g0031 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 901 IPR027417 -
Vvi17g0031 923 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Vvi17g0031 923 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Vvi17g0031 923 FunFam ATP-dependent Clp protease subunit 588 813 - -
Vvi17g0031 923 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Vvi17g0031 923 FunFam ATP-dependent Clp protease ATP-binding subunit 436 522 - -
Vvi17g0031 923 CDD RecA-like_ClpB_Hsp104-like 596 812 - -
Vvi17g0031 923 CDD AAA 275 427 - -
Vvi17g0031 923 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Vvi17g0031 923 Gene3D - 587 813 IPR027417 -
Vvi17g0031 923 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0031 Vvi-Chr17 243774 249091 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0031 K03696 - vvi:100250896 1734.92