Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0027 ATGGGGAAAGAAAACCAAGTGTCTGATATGCAAATCGACGATCAAAAATCGAATTCCGATCATGCCAACCCCAAATTCTCAATCAATGTGCTGCAGCTCTTGAAGTCTGCGCAAATGCAGCATGGATTACGACATGGTGATTACACGCGCTACCGGAGGTATTGCACTGCTCGATTGAGGCGGTTGTACAAGTCTCTGAAATTTACTCATGGTCGTGGTAAATACACCCGAAGATCCATTACCGAATCTACTGTGACAGAAGTGAGGTTTCTGCATCTCATTCTATATACAGCAGAAAGAGCTTGGAGCCATGCCATGGAGAAAAGACAGCTTCCAGATGGTCCAAATGCACGTCAACGGATCTACCTGATTGGTAGGCTGAGGAAGGCAGTAAAATGGGCTACTCTATTTTCACAATTGTGTGCAATTAAGGGAGATTCCAAAACATCTTTAGAAGCTGAGGCCTATGCCTCCTATATGAAAGGGACTTTGTTGTTTGAACAAGACCAGAATTGGGATATGGCACTAAAACTTTTTAAGAGTTCCAGAGCTGTCTATGAGGAACTTGGGAAATACGGAGACCTGGAGAATCAAGTTTTGTGCCGTGAACGTGTTGAGGAGCTAGAACCAAGTATTCGATATTGCCTCCATAAAATAGGTGCATCAAATTCACTAACTCCTGAACTCCTACACATGGAAGGGCCTGCACTGGATCTTTTCAGAGCTAAATTGGAGGCTGTTATGGCAGAGGCAAGGTCTCAACAGGCTGCATCTATGACAGAGTTTCATTGGCTTGGTCACAGATTTCCAATTTCTAATGCGAAAACTCGGGTTTCCATTTTGAAAGCTCAAGATTTGGAGAAAGATCTTCATGGTCCAGCAGCAGACTCACTTCCAGCAGAGAAAAAACTTGGCATTTTTGACAAAATTTTTACTGCATATCATGAGGCCAGGAGTTCCATCCGCAATGACTTGGTCACTGCAGGCAGTGCTGGAAACATGAAAGATGACTTAAATGGCCTTGATAAGGCTGTTAGTGCTGTCTTAGGCGAAAGAACCATTGAACGGAACCAGTTGTTGATTCGCATTGCTAAAAGTAAACTCACTAAGCAAGAAAAAAATGAGAAAGCGACAAAGCCTGAAGAGCTTGTTCGGTTGTATGATCTTTTATTACAGAATGTTGCTGATCTCTCTGATTTAGTTAGTTCTGGAAGAGACAGAAAACCAGAAGAAGTGTCATTTACTGAGGAGTGTGCTCTTAAAAGTTTAGCTTTCCGAGCAGAAAGGTGCTTTTACTTGGCAAAGTCATACAGTTTGGCTGGAAAGAGGACAGAAGCATATGCATTATATAGCCATGCCCGCTCTCTTGCAGATGATGCCCTGCAAAAACTTCAAGCTTCAAGTAACAATGATCAGACTCTGATCAAGGGGTTGAAGATGTTATATAATGACTGTAGATCAAACAGTTGTATAGAGCATGCCACGGTGATTATGGAGGAGGAGAAGGCTCCAGAGAATCTCTCACAGAAAATTTCTAATATATCATTGGCTGGAGCTCACAAAAAGGTGGAGACGTCTCTGATGGAGAAACTGGATGTCTACGAGTCTCTGGTGGGTGCATCAAACGTGAAAAGTGTTCCTCGCATTGAAGCCTTCCCACCAGCCTTCCAAACGATCCCTCGCAACCCCATTGTTTTGGACATTGCCTACAATTTTGTTGATTTCCCATCCCTAGAAAACAGGATGAAGAAAGACAAGAAGGGCTTCATTAGTCGGCTTTGGCGATGA 1788 0.4318 MGKENQVSDMQIDDQKSNSDHANPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRRSITESTVTEVRFLHLILYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSQLCAIKGDSKTSLEAEAYASYMKGTLLFEQDQNWDMALKLFKSSRAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGASNSLTPELLHMEGPALDLFRAKLEAVMAEARSQQAASMTEFHWLGHRFPISNAKTRVSILKAQDLEKDLHGPAADSLPAEKKLGIFDKIFTAYHEARSSIRNDLVTAGSAGNMKDDLNGLDKAVSAVLGERTIERNQLLIRIAKSKLTKQEKNEKATKPEELVRLYDLLLQNVADLSDLVSSGRDRKPEEVSFTEECALKSLAFRAERCFYLAKSYSLAGKRTEAYALYSHARSLADDALQKLQASSNNDQTLIKGLKMLYNDCRSNSCIEHATVIMEEEKAPENLSQKISNISLAGAHKKVETSLMEKLDVYESLVGASNVKSVPRIEAFPPAFQTIPRNPIVLDIAYNFVDFPSLENRMKKDKKGFISRLWR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0027 595 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 16 591 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi17g0027 595 Pfam RNA-binding signal recognition particle 68 43 573 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi17g0027 595 CDD SRP68-RBD 29 217 IPR034652 GO:0003723
Vvi17g0027 595 Gene3D - 25 221 IPR038253 GO:0003723
Vvi17g0027 595 FunFam Signal recognition particle subunit SRP68 25 222 - -
Vvi17g0027 595 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g0027 595 PIRSF SRP68 26 589 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0027 K03107 - vvi:100262919 1160.21