Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0026 ATGGCTGCACATCCACTGTCTCTGCTGCTGATTCTGTTACTGGGTGTTCTTCTTCCATGTGGGGATTCCAAGTTCATTGCCTACAACACGTCCCATGGCGTTGTTCCAGGGAAGCTCAACGTCCATCTGGTTCCTCACAGCCACGATGATGTGGGATGGTTGAAGACTATTGATCAGTACTACGTTGGCTCCAACAACTCCATCCAAGGGGCCTGTGTGGAGAATGTGCTTGATTCTCTCGTCACTGCCTTGCTCTCTAACCCCGACCGCAAATTCATCTACGTTGAGCAGGCGTTTTTCCAGCGGTGGTGGGGAGACCAGAGCGAGATAATCCAGGGTCTGGTTAGAAAGTTTATCAGCTCTGGTCAGCTAGAGCTCATAAATGGGGGTATGTGTATGCATGATGAGGCCACCTCGCATTACATCGACATGATCGATCAGACAACTCTTGGGCACCGGTTTATCAAGAATGAATTCAATCTCACCCCCAGAATTGGCTGGCAAATCGACCCCTTTGGCCATTCTGCAGTTCAGGCCTACCTGTTGGGGGCAGAGGTTGGGTTTGACTCCATTTTCTTTGCACGAATCGACTACCAAGATCGAGCTAAGCGAAAGGATGAGAAGAGCCTCGAGGTTATCTGGCAGGGGTCCAGGACTTTTGGCTCCTCCTCACAGATTTTTGCTGGTGCATTCCCGGAGAATTACGAACCACCCCCTGGTGGTTTCTACTATGAAGTTAATGATGATTCCCCTATTGTCCAGGACAACATCAAGTTGTTTGACTACAATGTCCCTGATCGAGTTAACGCTTTTGTAGAAGCTGCAATAGCACAAGCTAACATAACTCGCACAAATCATATAATGTGGACAATGGGGACAGACTTCAAGTATCAATATGCAAATTCATGGTTCCGGCAGATGGACAAACTTATTCATTATGTCAATCTAGATGGGCGTGTCAACGCCTTGTACTCGACTCCGTCGATTTACACTGATGCAAAGCATGCAGCAAGTGAGTCATGGCCACTCAAAACCGACGACTACTTCCCATATGCAGACCGTATCAATGCCTACTGGACAGGATATTTTACAAGTAGAGCAGGCTTAAAAGGCTATGTTAGGATGATGAGCAGTTACTATTTGGCAGCAAGGCAATTGGAATTCTTTAAAGGGAGAAATGAATCAGGGCCGACTACAGACTCTTTGGCTGATGCTTTGGCGATTGTTCAGCATCATGATGCAGTTACTGGTACGGAGAAGCAGCATGTGTCTGATGATTATGCAAAACGGCTGTCCATAGGATACAAGGAGGCTGAGGAAGTAGTTGCAGCTTCAATCTCTTGCATCACAGGGTCAGGTTGTGGAAGTTCAATAACGAAGTTTGAACAGTGCCCACTTCTGAATATAAGTTACTGTCCTCCATCAGAAATTGATCTGTCCCAAGGGAAAAACCTGGTTGTCGTAGTCTACAATTCTCTGGGATGGAAAAGAGAGGATGTAGTAAGAATTCCTGTTCTCAGTGAGAATGTTGTTGTTCGGGATTCCAGTGGAAAAGAAATTGAGTCACAGATTCTACCTTTAGCTAATGCCTATGTGGGCATAAGAAACTATTATGTCATGGCACATTTGGGTAAAATTCCAGCTGTGACTCCTCAGTATTGGCTTGCATTTTCAGCATCTGTACCGCCTCTTGGTCTCAGCACTTACTTCATCTCAAAAGCCAATCGAAAAGCTTCCACCTCAATGCAAACATTGTTCAAGGCAACCGGGTCTGCAACTGATACAATAGCAGTTGGGCCGGGAAATCTGAAACTTATTTATTCTGAGAATGAAGGAAAACTTGTTGGCTACATTAACACCAGAAGCAGGATCAATGCATCTATGGAACAATCATATAGGTATTATACTGGAAATGATGGAAGTGCAGACAAAAAAGTAATTCCTCAGGCCTCTGGAGCTTATGTCTTTCGGCCAAATGGTTCATACCCCATTAAATCTGAAGAACAGGGTGCTTTTACTGTTTTGCGTGGACCGGTATTGGATGAAGTACATCAAAGAATCAATTCATGGATATCTCAGATCACCAGAGTATACAAGGGAAAAGAGCATGCTGAAGTTGAGTTTACAATCGGGCCGATACCTATTGATGATGGGCAGGGCAAAGAAGTTGTAGCTGATATCACAACCGCCATGAAGAGCAACAAAACATTTTATACAGATTCCAGCGGGCGGGATTTCATTGAGAGGATTCGAGATTATAGAAAGGACTGGCACCTGGAAGTGAACCAACCTGTGGCAGGAAATTACTACCCACTTAATCTTGGGATTTTTATGAAAGACGACAGCACAGAGCTCTCAATGTTGGTTGACCGAGCTGTGGGAGGATCCAGCATTGTGGATGGCCAACTGGAGCTCATGCTCCACCGGAGGTTGGTTCATGATGACTCTAGAGGTGTTGCAGAGGCACTAAACGAAACTGTTTGTGCATTTGATAAATGCGCAGGATTGACTGTCCAAGGAAAGTTTTTCCTAAGAATTGATCCATTGGGAGAGGGTGCTAAATGGCGTCGGTCATTTGGGCAGGAGATATACTCTCCTTTCCTCTTAGCCTTCACTGAGCAGGATGGAAAGGAATGGACAAGCCCACGTGTGTCCACCTTCTCAGGGTTGGATCCCTCCTACAGTTTACCTGATAATGTTGCAATGATAACCCTTCAGGAGCTGGAAGATGGGAAAGTTCTGCTTCGTTTGGCTCACCTCTACGAGGTTGGTGAGGACAAGGATCTCTCAGTTATGGCAAGTGTGGAACTGAAAAAACTCTTCCCAAATAAGAAGATAAGTAGTGCAGAGGAGATGTCCCTATCTGCCAATCAAGGAAGAGCCGAGATGGAGAAGAAAAGACTGGTGTGGAAAGCAGAAGGCTCTCCCCAAGGAGCCAAGGCGGCAAGGGGAGGAGCTGTTGATCCAGCAGGGCTGGTGGTGGAACTCGGCCCTATGGAAATTCGTACCTTTGTTATCAGCTTCCTTTAA 3030 0.4591 MAAHPLSLLLILLLGVLLPCGDSKFIAYNTSHGVVPGKLNVHLVPHSHDDVGWLKTIDQYYVGSNNSIQGACVENVLDSLVTALLSNPDRKFIYVEQAFFQRWWGDQSEIIQGLVRKFISSGQLELINGGMCMHDEATSHYIDMIDQTTLGHRFIKNEFNLTPRIGWQIDPFGHSAVQAYLLGAEVGFDSIFFARIDYQDRAKRKDEKSLEVIWQGSRTFGSSSQIFAGAFPENYEPPPGGFYYEVNDDSPIVQDNIKLFDYNVPDRVNAFVEAAIAQANITRTNHIMWTMGTDFKYQYANSWFRQMDKLIHYVNLDGRVNALYSTPSIYTDAKHAASESWPLKTDDYFPYADRINAYWTGYFTSRAGLKGYVRMMSSYYLAARQLEFFKGRNESGPTTDSLADALAIVQHHDAVTGTEKQHVSDDYAKRLSIGYKEAEEVVAASISCITGSGCGSSITKFEQCPLLNISYCPPSEIDLSQGKNLVVVVYNSLGWKREDVVRIPVLSENVVVRDSSGKEIESQILPLANAYVGIRNYYVMAHLGKIPAVTPQYWLAFSASVPPLGLSTYFISKANRKASTSMQTLFKATGSATDTIAVGPGNLKLIYSENEGKLVGYINTRSRINASMEQSYRYYTGNDGSADKKVIPQASGAYVFRPNGSYPIKSEEQGAFTVLRGPVLDEVHQRINSWISQITRVYKGKEHAEVEFTIGPIPIDDGQGKEVVADITTAMKSNKTFYTDSSGRDFIERIRDYRKDWHLEVNQPVAGNYYPLNLGIFMKDDSTELSMLVDRAVGGSSIVDGQLELMLHRRLVHDDSRGVAEALNETVCAFDKCAGLTVQGKFFLRIDPLGEGAKWRRSFGQEIYSPFLLAFTEQDGKEWTSPRVSTFSGLDPSYSLPDNVAMITLQELEDGKVLLRLAHLYEVGEDKDLSVMASVELKKLFPNKKISSAEEMSLSANQGRAEMEKKRLVWKAEGSPQGAKAARGGAVDPAGLVVELGPMEIRTFVISFL* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0026 1009 CDD GH38N_AMII_LAM_like 39 315 - -
Vvi17g0026 1009 SUPERFAMILY Families 57/38 glycoside transferase middle domain 356 450 IPR028995 -
Vvi17g0026 1009 Gene3D - 598 865 - -
Vvi17g0026 1009 SUPERFAMILY Glycoside hydrolase/deacetylase 28 353 IPR011330 GO:0005975
Vvi17g0026 1009 SMART Alpha_mann_mid_2 357 431 IPR015341 GO:0004559|GO:0006013
Vvi17g0026 1009 Pfam Alpha mannosidase middle domain 357 447 IPR015341 GO:0004559|GO:0006013
Vvi17g0026 1009 SUPERFAMILY Galactose mutarotase-like 457 1008 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vvi17g0026 1009 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 899 1004 IPR041147 -
Vvi17g0026 1009 Pfam Glycosyl hydrolases family 38 N-terminal domain 40 352 IPR000602 GO:0004559|GO:0006013
Vvi17g0026 1009 Gene3D - 473 597 IPR013780 -
Vvi17g0026 1009 FunFam Alpha-mannosidase 399 454 - -
Vvi17g0026 1009 Gene3D Glycoside hydrolase family 38, central domain 321 399 IPR037094 GO:0004559|GO:0006013
Vvi17g0026 1009 FunFam Alpha-mannosidase 319 398 - -
Vvi17g0026 1009 FunFam Alpha-mannosidase 597 865 - -
Vvi17g0026 1009 PANTHER ALPHA-MANNOSIDASE 20 1008 - -
Vvi17g0026 1009 FunFam Alpha-mannosidase 39 320 - -
Vvi17g0026 1009 Gene3D Glycoside hydrolase family 38, central domain 400 453 IPR037094 GO:0004559|GO:0006013
Vvi17g0026 1009 Gene3D Glycoside hydrolase 38, N terminal domain 39 320 IPR027291 -
Vvi17g0026 1009 FunFam Alpha-mannosidase 885 1009 - -
Vvi17g0026 1009 Gene3D - 884 1009 - -
Vvi17g0026 1009 FunFam Alpha-mannosidase 473 597 - -
Vvi17g0026 1009 Pfam Glycosyl hydrolases family 38 C-terminal domain 600 817 IPR011682 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0026 Vvi-Chr17 184825 190323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0026 10 922 Glycoside Hydrolase AT5G13980 69.399 0.0 1357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0026 K01191 - vvi:100249067 2010.34