Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0021 ATGAATGCGAGGAAGCCCAAGGTGGAGGTAGATGATCGGATCACGACGGAAGAGGACGGCGAAGAAAACTCCAGAGACGAGCAAGAAGAAGCATTGGTGGCTCTGATCGAGCACCGCACCAAAGAAGTCGAACATATCCGCAAGCGCATAACCTATTACCAATCTCAGCTTCAAGAAGCAGAAAAGAAGTTACTTGATTCACAAGCTCAGTTGGGTCGACTGCGATCAAAAGACAATCTGGTATCGTCTAGGAGCCCTCTGGATAATGGAACTAAAAAAGTGAAAGTGGAGCGTAGATCAACTAGTCCTCTGCAACTTCAATCAAGGCCAGAACTTTTAATTCCTGCTGTGAATCCAAAAATTTCCCAACCTGTAAAATTGGCGGATGCTGGCACTCGAGCTAGATCACCGACTCCCAATCATGCTCATAGTGTGGGAAAAGTGAAATGGGAAAAGTCTCATGGAAGCTCATCTGAGCGGGAAATGGTTGAAGTGCAAGATAAAGGGACAAAAAGGAAGTTTGAACCAAAAGAGCACAAAGAATTGATTACATCCATAGCTACCTCTTCTTCTCCAGTTATTGTCCGCTGTTATTCGAGCTCTCACATCTCCAGTCAGCATAAGAGAAAGTTGAGAAGTCTTGTTCTGTGTCCAGTTAACAATCAGCTTTTCGCTACCAGTGCTTTGGATGGAATAGTCAACTTGTGGCAAATTCAGGCCAGAGGATCAGGGGCCTCTCTACTTAGTGCTACTGATTGTTTATCACAAAAGCAAAGGAGATGGCCAGAAGATATGGCCTGGCACCCAGAAGGAAACAGCATATTTTCTGTATACAACGCTGATGATGGGGATTCTCAGATATCAGTCCTAAATCTGAATAGAACAAAAGGGCAGGGAGCACGCGTGACTTTCCTAGAGGAGAAGCCTCATGTTAAAGGCATCATCAACAGTATAAGTTTCATGCCCTGGGAAAATCCATGTTTTGTTACTGGTGGTAGTGATCACGCTGTTGTACTTTGGAATGAGAAAGACGAGGAGAAATTATGGAAACCAAAGGCGTTGCACAGGAATATGCACTCTTCTGCTGTCATGGGAGTTGCTGGGATGCAGCAAAAGCAGATTGTATTGTCTGTTGGTGCGGACAAGAGAATTATTGGGCTTGATTTACATACAGGAAGAACAGATTTCAAGCATCAGATTGATAGCAAATGCATGAGCATTGTCCCTAATCCATGTGATTTCAATTTATATATGGTTCAGGCAGGGACTCCTGGGAAGCAGCTCCGATTGTTTGATATTAGATTGAGGCAAACAGAACTCCATGCATTTGGGTGGAAACAAGAAAGCAGTGACTCCCTGTCAGCCCTGATAAATCAGACATGGTCTCCTGATGGTTTATACATCACCTCTGGTTCAGTAGACCCTGTGATCCATATCTTTGATATAAGGTCTTATGCTCACAAACCTTCACAATCAATTAAAGCTCATCAAAAACGAGTCTTCAAAGCTATATGGCACCATTCTCTCCCCCTTCTCATTTCGATATCTTCTGATCTGAACATTGGACTGCACAAACTCTCATGA 1584 0.4369 MNARKPKVEVDDRITTEEDGEENSRDEQEEALVALIEHRTKEVEHIRKRITYYQSQLQEAEKKLLDSQAQLGRLRSKDNLVSSRSPLDNGTKKVKVERRSTSPLQLQSRPELLIPAVNPKISQPVKLADAGTRARSPTPNHAHSVGKVKWEKSHGSSSEREMVEVQDKGTKRKFEPKEHKELITSIATSSSPVIVRCYSSSHISSQHKRKLRSLVLCPVNNQLFATSALDGIVNLWQIQARGSGASLLSATDCLSQKQRRWPEDMAWHPEGNSIFSVYNADDGDSQISVLNLNRTKGQGARVTFLEEKPHVKGIINSISFMPWENPCFVTGGSDHAVVLWNEKDEEKLWKPKALHRNMHSSAVMGVAGMQQKQIVLSVGADKRIIGLDLHTGRTDFKHQIDSKCMSIVPNPCDFNLYMVQAGTPGKQLRLFDIRLRQTELHAFGWKQESSDSLSALINQTWSPDGLYITSGSVDPVIHIFDIRSYAHKPSQSIKAHQKRVFKAIWHHSLPLLISISSDLNIGLHKLS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0021 527 SMART WD40_4 350 388 IPR001680 GO:0005515
Vvi17g0021 527 SMART WD40_4 197 237 IPR001680 GO:0005515
Vvi17g0021 527 SMART WD40_4 298 341 IPR001680 GO:0005515
Vvi17g0021 527 SMART WD40_4 446 481 IPR001680 GO:0005515
Vvi17g0021 527 SMART WD40_4 486 525 IPR001680 GO:0005515
Vvi17g0021 527 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0021 527 SUPERFAMILY WD40 repeat-like 209 525 IPR036322 GO:0005515
Vvi17g0021 527 Gene3D - 154 411 IPR015943 GO:0005515
Vvi17g0021 527 Gene3D - 412 527 IPR015943 GO:0005515
Vvi17g0021 527 MobiDBLite consensus disorder prediction 131 171 - -
Vvi17g0021 527 MobiDBLite consensus disorder prediction 1 29 - -
Vvi17g0021 527 Pfam WD domain, G-beta repeat 459 481 IPR001680 GO:0005515
Vvi17g0021 527 MobiDBLite consensus disorder prediction 76 107 - -
Vvi17g0021 527 MobiDBLite consensus disorder prediction 145 171 - -
Vvi17g0021 527 Coils Coil 43 77 - -
Vvi17g0021 527 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 3 526 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0021 - - vri:117904810 1047.73