Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0020 ATGGGAAATTGCTGCTCCGACGACGGCGGCGGAAGGTCGGCGGTGGGCGGCACATCCGCTTCTCAACATGATCATAACGACGCCGTGGATTTATTCCTCAAGTCTCGCGGCTACCGCGGCCTTTTTGTTCAGATCGAGCTATCATTGTCTGCTTCAAACTTGCGTGATCGGGATGTGCTCTCCAAGAGTGACCCCATGGCAGTTGTCTATACAAAATCAAAAGATGGAGCTCTTGAAGAGCTGGGCCGTACTGAAGTGGTGTTGAATTCATTGAATCCCATGTGGTTCACGAAACTTATTATTAATTATCAGTTTGAAGTTGTGCAGACCTTGGTGTTTCGGGTGTATGATGTTGACACTCAGTTTCACAATGTAGATGTAAAGATGCTTAAGCTGGATGAGCAGCAGTTTCTTGGTGAGGCTACTTGTTCATTGTCTGAGATAGTTTCCAAGTCAAACAGGTCTTTGACCTTAGATCTTGTACATAGAGAAGAATCTATCAAATCAACCCGTTCACAAAACTTAGGAGAGCTTACTGTTCATGCTGAGGAATTGAGTAGTTCAAAGATCGCAATGGAGATAATATTCAGGTGTTCAGATTTGGAATATAAGGATCTCTTCTCAAGAAGTGACCCCTTTCTAGTAATATCAAAGATTGTCGAGGGTGGGATCTCTATCCCAATTTGCAAGACAGAAGTCATAAAGAATGATCTCAAACCAAAATGGAAATCAGTATTTCTGAACATTCAACAAGTTGGAAGCAAGGACAATCTGTTAACAATAGAGTGCTTTAACTTCAATAGCAATGGAAAACATGATTTAATTGGGAAAATTCAAAAATCGCTTGCAGACTTGGAAAAGCTCCATTCTAGTGGGCAGGGAGAGAATTTTTTTTTACCAACTGCTGTTGGAAACAATCACCACAACAAGGTGTTAAAGAGTCAGTTATTTGTGGAGTACTTTTCTGAGACTGTCGAACACACTTTTCTGGATTACTTGGCTGGTGGATGTGAACTGAACTTCATGGTGGCTATTGATTTCACAGCTTCAAATGGAAATCCTCGCCTCCCTGATTCCTTGCATTATATTGACCCCTCAGGCCGGCCAAATGCATATCAGAGAGCAATATTAGAGGTTGGAGAAGTGTTACAGTTTTATGATTCAGACAAGCGCTTTCCTGCCTGGGGTTTTGGAGCACGGCCAATTGATGGTCCTGTCTCTCATTGTTTCAATTTGAACGGAAGCAGTAATTACTGTGAGGTTGATGGAATTCAAGGAATTATGATGGCGTATACAAGTGCTCTCTTTAATGTTTCTCTTGCAGGGCCGACCCTTTTTGGACCTGTGATTAGCAGTGCTGCGCAGATTGCCAGCCAGTCACTTATAAATGGTCGACAAAAATACTATGTTTTGTTAATAATCACAGATGGAGTGATAACTGATCTCCAAGAAACCAAAGATGCCCTTGTGAAGGCATCTGACTTGCCATTGTCAATTTTTATTCTTGGAGTTGGAGGAGCTGACTTTAAGGAGATGGAGGTCTTAGATGCAGATAAAGGAGAGAGACTGGAAAGTTCAAATGGACGTGTTGCATCGCGCGATATAGTCCAGTTTGTTCCATTTCGTGATGTGCACAGTGGAGAGATCTCTGTCGTTCAAGCCCTTCTCGCAGAATTACCTACTCATTTTTTAACCTACATGCGAACAAGAAATATTCTTCCAAATTCCTGA 1731 0.4217 MGNCCSDDGGGRSAVGGTSASQHDHNDAVDLFLKSRGYRGLFVQIELSLSASNLRDRDVLSKSDPMAVVYTKSKDGALEELGRTEVVLNSLNPMWFTKLIINYQFEVVQTLVFRVYDVDTQFHNVDVKMLKLDEQQFLGEATCSLSEIVSKSNRSLTLDLVHREESIKSTRSQNLGELTVHAEELSSSKIAMEIIFRCSDLEYKDLFSRSDPFLVISKIVEGGISIPICKTEVIKNDLKPKWKSVFLNIQQVGSKDNLLTIECFNFNSNGKHDLIGKIQKSLADLEKLHSSGQGENFFLPTAVGNNHHNKVLKSQLFVEYFSETVEHTFLDYLAGGCELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAILEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSNYCEVDGIQGIMMAYTSALFNVSLAGPTLFGPVISSAAQIASQSLINGRQKYYVLLIITDGVITDLQETKDALVKASDLPLSIFILGVGGADFKEMEVLDADKGERLESSNGRVASRDIVQFVPFRDVHSGEISVVQALLAELPTHFLTYMRTRNILPNS* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0020 576 FunFam Protein BONZAI 1 47 191 - -
Vvi17g0020 576 CDD vWA_copine_like 309 563 IPR010734 -
Vvi17g0020 576 Pfam Copine 359 574 IPR010734 -
Vvi17g0020 576 SMART C2_3c 195 294 IPR000008 -
Vvi17g0020 576 SMART C2_3c 42 157 IPR000008 -
Vvi17g0020 576 Gene3D C2 domain 41 193 IPR035892 -
Vvi17g0020 576 SMART VWA_4 338 535 IPR002035 -
Vvi17g0020 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 195 288 IPR035892 -
Vvi17g0020 576 SUPERFAMILY vWA-like 337 521 IPR036465 -
Vvi17g0020 576 CDD C2A_Copine 44 164 - -
Vvi17g0020 576 FunFam Protein BONZAI 1 isoform A 192 311 - -
Vvi17g0020 576 ProSiteProfiles C2 domain profile. 174 298 IPR000008 -
Vvi17g0020 576 Gene3D C2 domain 194 319 IPR035892 -
Vvi17g0020 576 ProSiteProfiles C2 domain profile. 25 158 IPR000008 -
Vvi17g0020 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 49 163 IPR035892 -
Vvi17g0020 576 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g0020 576 CDD C2B_Copine 192 287 IPR037768 -
Vvi17g0020 576 PANTHER COPINE 24 575 IPR045052 GO:0005544
Vvi17g0020 576 Pfam C2 domain 195 290 IPR000008 -
Vvi17g0020 576 Pfam C2 domain 49 157 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0020 Vvi-Chr17 116955 141548 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0020 - - vvi:100250795 1139.41