Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0018 | ATGGATGCTGCAAAAATCCTTGCGAACTTGGTTGTTATTGGATCCGGAATATTAGCAAGAGCTTTAGTTCAAGCATATCGTCAGGCACTTGCAAATGCCTCAAAATCTGGTGTTGCTCAAGAAACAGTACAGAACATCAGGAGAGGAAGCAAAATAATGGCTGAACTAGAGGCAAGGCAGATTCTAGGTGTCACTGAGCATTCATCGTGGGAGGAAATCTTACAGAAGTACGATAACTTGTTTGAGCAGAATGCTAAGAATGGCAGCTTTTACCTCCAATCAAAGGTTCATAGAGCTAAAGAGTGTTTAGAATCTGTTTATTAA | 324 | 0.4043 | MDAAKILANLVVIGSGILARALVQAYRQALANASKSGVAQETVQNIRRGSKIMAELEARQILGVTEHSSWEEILQKYDNLFEQNAKNGSFYLQSKVHRAKECLESVY* | 108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0018 | 107 | Gene3D | DnaJ domain | 53 | 107 | IPR036869 | - | |
| Vvi17g0018 | 107 | Pfam | Pam16 | 7 | 104 | - | - | |
| Vvi17g0018 | 107 | FunFam | Import inner membrane translocase subunit TIM16 | 53 | 107 | - | - | |
| Vvi17g0018 | 107 | PANTHER | MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE | 1 | 107 | IPR005341 | GO:0005744|GO:0030150 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g0018 | Vvi-Chr17 | 102558 | 103500 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0018 | K17805 | - | vvi:100267977 | 202.986 |