Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0014 ATGGAAGACTCTCTACGCAAAGCCCTATCCGAGAAACAAGCCGCCGTCGACGCCCAAGGCGGCGCCGTCAGGGAGCTCAAGGCCTCCGGCGCTCCCAAGGATGCGATCGACGCCGCCGTCCAAGAGCTCAACGCCTTGAAGCTTGAGAAGGCTTCCATTGAGAAGCAGCTGCAAGCCGCCCTCACTAACGGCAACGATAACGCGCTCAGTAGGGATGCCTTCCGCCAGGCCCTGGTCAACACCCTTGAGAGGCGCCTCTTTTACATACCCTCCTTCAAGATCTATCGTGGGGTCGCCGGCCTTTACGACTATGGCCCTCCCGGTTGCGCCGTCAAGTCCAATGTTCTCGCCTTCTGGCGTCAGCATTTTGTTCTGGAGGAGAATATGTTGGAAGTTGATTGCCCATGTGTGACACCAGAAATTGTATTGAAGGCATCGGGTCATGTTGATAAGTTCACTGATCTTATGGTGAAGGATGAAAAAACGGGTACCTGTTACCGTGCTGATCACTTGCTCAAGGATTTCTGCAAAGAGAAGCTTGAGAAGGACCTTACTATCAGTGGGGAGAAGGCAGCAGAATTGAAACATATTCTGGCTGTTCTTGATGATCTTTCTGCTGAGGAATTGGGTGGCAAGATCAAGGAATATGGTATAACTGCCCCTGATACAAAAAACCCGCTTTCTGCTCCTTATCCATTCAATTTGATGTTCCAGACCTCAATCGGCCCATCTGGCTTGAGCCCAGGGTATATGCGGCCAGAGACAGCACAGGGCATTTTTGTAAACTTCAAGGATCTGTATTACTATAATGGGAACAAGCTCCCTTTTGCTGCAGCTCAAATTGGTCAGGCTTTTAGAAATGAGATATCTCCACGCCAAGGTCTCTTAAGAGTTCGTGAATTTACTCTGGCTGAGATTGAGCACTTTGTGGATCCTGATGACAAGTCTCACCCAAAATTTTCTGAAGTTGCAAATTTGGAGTTCTTGATGTTTCCAAGGGGGGAGCAGGTTTCTGGACAATCAGCAAAGAGAACGGTCCTTGGTGAAGCAGTTTCAAAGGGCATTGTCAACAATGAAACACTTGGCTATTTCATAGGGAGGGTGTATCTGTTCCTAACAGGCCTTGGTATCGACAAGGAGCGCCTACGTTTCCGGCAGCATCTTGCAAATGAGATGGCTCACTATGCTGCAGACTGTTGGGATGCTGAGATTGAGTGCTCTTATGGATGGATTGAGTGCGTTGGTATTGCTGATAGATCTGCATATGATTTGCGTGCACACACGGATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGAAACCAAAAAATGGTTGTGGAAGCGTTGGAGGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACGGGAGAGGTAGGGTTCCATGTCTGCACTCTTGGGAAAGATGTCACTATAACGAAGAAAATGCTGTCGATCTCCAAGGAGAAAAAGAAGGAACATCAAAGGGTTTTCACACCTTCAGTTATTGAACCATCGTTTGGAATTGGGCGAATAATCTACTGTCTTTATGAGCATTCCTTCTACACGAGGCCTAGTAAAGCTGGGGATGAACAGTTGAATGTATTCCGCTTCCCTCCCCTTGTTGCACCTATCAAATGCACTGTATTCCCGCTGGTGCAAAATCAGCAATACGAGGAAGTTGCCAAAAGCATTGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCTTGCCATCACAGTGGATTCTACATCCTCGGTGACAATCAGGGAGAGAGATAGCAAGGATCAAATTCGTGTTAGTGTGGAGGAGGTGGCATCTGTAGTCAAGGAGGTGACTGATGGTCAGAGCACATGGGCTGATGTACTATGGAGATACCCTACTCATTCATCTGCGTCTGTGGATGAGTGA 2064 0.4758 MEDSLRKALSEKQAAVDAQGGAVRELKASGAPKDAIDAAVQELNALKLEKASIEKQLQAALTNGNDNALSRDAFRQALVNTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCKEKLEKDLTISGEKAAELKHILAVLDDLSAEELGGKIKEYGITAPDTKNPLSAPYPFNLMFQTSIGPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPDDKSHPKFSEVANLEFLMFPRGEQVSGQSAKRTVLGEAVSKGIVNNETLGYFIGRVYLFLTGLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTDKSGVPLVAHEKFAEPREVEKLIIAPVKKELGLAFKGNQKMVVEALEAMSEKEAMEMKATLESTGEVGFHVCTLGKDVTITKKMLSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKSIAKSLTAAGISYKIDITGTSIGKRYARTDELGVPLAITVDSTSSVTIRERDSKDQIRVSVEEVASVVKEVTDGQSTWADVLWRYPTHSSASVDE* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0014 687 Gene3D - 12 59 - -
Vvi17g0014 687 Coils Coil 36 63 - -
Vvi17g0014 687 SMART WHEP_TRS_a_2_a_3_a 12 65 IPR000738 GO:0004812|GO:0005524|GO:0006418
Vvi17g0014 687 ProSiteProfiles WHEP-TRS domain profile. 8 64 IPR000738 GO:0004812|GO:0005524|GO:0006418
Vvi17g0014 687 Pfam WHEP-TRS domain 14 52 IPR000738 GO:0004812|GO:0005524|GO:0006418
Vvi17g0014 687 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 250 548 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi17g0014 687 FunFam Glycine--tRNA ligase 2 573 684 - -
Vvi17g0014 687 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 72 554 IPR006195 -
Vvi17g0014 687 Gene3D - 452 520 - -
Vvi17g0014 687 FunFam Glycine--tRNA ligase, mitochondrial 1 13 59 - -
Vvi17g0014 687 Pfam Anticodon binding domain 575 662 IPR004154 -
Vvi17g0014 687 CDD GlyRS-like_core 78 424 IPR033731 -
Vvi17g0014 687 NCBIfam glycine--tRNA ligase 76 663 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vvi17g0014 687 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 9 683 IPR027031 -
Vvi17g0014 687 FunFam Glycine--tRNA ligase 151 235 - -
Vvi17g0014 687 CDD WHEPGMRS_RNA 13 49 - -
Vvi17g0014 687 FunFam Glycine--tRNA ligase 2 451 520 - -
Vvi17g0014 687 Gene3D Bira Bifunctional Protein; Domain 2 80 441 IPR045864 -
Vvi17g0014 687 Gene3D - 151 235 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 231 243 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 94 108 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 529 541 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 282 299 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 250 267 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 299 309 - -
Vvi17g0014 687 PRINTS Glycyl-tRNA synthetase signature 614 633 - -
Vvi17g0014 687 SUPERFAMILY S15/NS1 RNA-binding domain 15 60 IPR009068 -
Vvi17g0014 687 SUPERFAMILY Class II aaRS and biotin synthetases 75 578 IPR045864 -
Vvi17g0014 687 FunFam Glycyl-tRNA synthetase 1 232 441 - -
Vvi17g0014 687 SUPERFAMILY Class II aaRS ABD-related 563 679 - -
Vvi17g0014 687 Gene3D - 573 683 IPR036621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0014 Vvi-Chr17 74383 78921 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0014 K01880 - vvi:100257704 1345.1