Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0012 ATGGAGGCCAAAAGGCTGTGCTCTCAAGCAGGGCGGTGGCGTCAGATGCACCCCGCCGCACCCATCTTATCTGCTAATTCCTACTTGGTCCACCCCACAAATTCACTCAATTCTTCACCCTCCTCTACAATCCCAGATCATCAAAAGCTGAACTGTATTCTTGAAGCCTGCAAATTCTCCTCAGATTTCAGAACTGCATTTCAGAGCCACGCTAAAATCATAAAATTTGGATATGGTACGTACCCATCCCTTATAACCTCTCTCGTATCAACATATGCGCATTGTGATTGCCTGGATCTTGCTCATCAACTTCTTGATGAAATGCCCTATTGGGGTTTTGATTTGATCACTGCAAATTTAATAATAGCAAGCTTGATGAAAGTTGGAGAGTTTGACTTTGCCAAGAGGGTATTCCGTAAAATGCTCCGTCGAGATGTGGTTACATGGAACTCAATGATTGGAGGCTGTGTTAGAAATGAACGGTTTGAGGAGGCTCTTAGATTCTTTCGAGAAATGCTGAACTCGAATGTTGAACCGGATGGGTTTACGTTTGCATCCGTTATTAATGGCTGTGCACGACTTGGATCTTCTCATCATGCTGAGTTGGTGCATGGTTTAATGATTGAGAAGAAGATTCAACTGAACTTTATATTGAGTTCGGCATTAATAGATCTGTACTCAAAATGTGGAAGAATCAATACTGCAAAAAAAGTTTTTAATAGCATTCAGCATGATGATGTGTCTGTCTGGAATTCAATGATTAATGGCCTAGCAATTCATGGGCTTGCTTTGGATGCAATTGGAGTATTCTCACAAATGGAGATGGAAAGTGTTTCACCTGATTCTATAACCTTCATTGGAATTTTAACAGCATGTAGCCATTGTGGTTTGGTTGAACAAGGTCGCAGGTATTTTGATCTAATGAGAAGGCATTACTCAATTCAGCCACAGCTTGAGCATTATGGAGCCATGGTTGACCTTCTGGGTCGAGCTGGGTTGGTCGAAGAAGCTTATGCAATGATTAAGGCAATGCCAATGGAGCCAGATATTGTCATATGGAGGGCGCTTCTTAGTGCTTGCAGAAATTTCAAGAATCCAGAATTGGGGGAAGTTGCAATTGCAAAAATATCACATCTCAATAGTGGAGATTACATCTTGTTGTCGAATATGTATTGCTCACTAGAGAAATGGGATTCCGCAGAAAGAGTGAGAGAAATGATGAAAAGAGATGGAGTTCGTAAGAATCGTGGTAGAAGTTGGGTTGAGTTGGGTGGTGTCATTCACCAATTCAAGGCTGGTGATCGATCACATCCTGAAACAGGAGCAATCTACAAAGTGCTGGAAGGATTGATCCGACGCACCAAGTTGGAAGGATTTATGCCAGCTACTGACTTGGTTTTAATGGATGTGTCTGATGAGGAAAGAGAGGAGAACTTGAATTCCCACAGTGAGAAGTTGGCATTGGCTTATGTGATCCTCAAAACCAGTCCTGGAACAGAAATTAGGGTTTCAAAAAATCTCCGCACTTGTCATGACTGTCATTGTTGGATGAAAATACTCTCTAGACTGCTAAGCAGGGTGATAATAGTGAGGGATCGGATCCGTTTTCATCAGTTTGAAGGGGGTTTATGTTCCTGCAGAGACTATTGGTAG 1653 0.4217 MEAKRLCSQAGRWRQMHPAAPILSANSYLVHPTNSLNSSPSSTIPDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHLNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0012 550 NCBIfam pentatricopeptide repeat 147 180 IPR002885 -
Vvi17g0012 550 NCBIfam pentatricopeptide repeat 182 215 IPR002885 -
Vvi17g0012 550 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Vvi17g0012 550 NCBIfam pentatricopeptide repeat 117 147 IPR002885 -
Vvi17g0012 550 Pfam E motif 364 422 IPR046848 -
Vvi17g0012 550 Gene3D Tetratricopeptide repeat domain 145 246 IPR011990 GO:0005515
Vvi17g0012 550 Gene3D Tetratricopeptide repeat domain 37 144 IPR011990 GO:0005515
Vvi17g0012 550 Gene3D Tetratricopeptide repeat domain 260 436 IPR011990 GO:0005515
Vvi17g0012 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Vvi17g0012 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 45 487 IPR046960 GO:0003723|GO:0009451
Vvi17g0012 550 Pfam PPR repeat 220 244 IPR002885 -
Vvi17g0012 550 Pfam PPR repeat 320 345 IPR002885 -
Vvi17g0012 550 Pfam PPR repeat 86 112 IPR002885 -
Vvi17g0012 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Vvi17g0012 550 FunFam Pentatricopeptide repeat-containing protein 218 441 - -
Vvi17g0012 550 Pfam DYW family of nucleic acid deaminases 458 550 IPR032867 GO:0008270
Vvi17g0012 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi17g0012 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi17g0012 550 Pfam PPR repeat family 246 293 IPR002885 -
Vvi17g0012 550 Pfam PPR repeat family 144 193 IPR002885 -
Vvi17g0012 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 144 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0012 Vvi-Chr17 67598 69620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0012 117 550 Glycoside Hydrolase AT3G49170 41.043 1.86e-115 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0012 - - vvi:100247459 1095.49