Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0009 ATGAGCTTTGATGAGAAGTTAGAAGAAGCGAGAGATGGGGAAGGTAGCATGAAAATCAATGAGATGGAACAGACTAAAGTCAGTCTCATGAGGACCTATGTTGAATCCCAGGATCCTTCTTCCCGGGACCCTTCTTCCCAGAAAGCGGATGATCTGATGATTAGAAGGTTCCTTCGTGCTCGTGATTTAGATGTCCGAAATGAAGTGGCTCAGAACAAGATGTTTCTGCAAGGATTGGATAAACAAGGCCGACCCATAAGCGTTGTCCTTGGTGCTAAACATTTCCAATACCAAGGGAGTTTAGATGAGTTCAAACGTTTTTTAGTGTATGCTTTCGACAAAATATGCACAAGGATGCCACCAGGACAGGAGAAGTTTGTTGTTATTGGAGATCTTGAAGGATGGGGATATTCAAATAGTGATATGCGCGCATACCTTGGAGCTCTATCCATTTTGCAGGACTACTACCCTGAAAGACTTGGGAAGCTGTTTATTATTCATGCACCTTACATATTTATGGCAATATGGAAAATTGTTTACCCATTTATCGACAAAAATACCAAGAAGAAGATCGTGCTTGTGGAGAAGACAAAGCTGAGATCAACTCTACTTGAAGAAATTGATGAGAGCCAACTACCACAGATCTATGGAGGCAAACTGCCATTGGTTCCAATCCAAGACAGCTAA 687 0.4192 MSFDEKLEEARDGEGSMKINEMEQTKVSLMRTYVESQDPSSRDPSSQKADDLMIRRFLRARDLDVRNEVAQNKMFLQGLDKQGRPISVVLGAKHFQYQGSLDEFKRFLVYAFDKICTRMPPGQEKFVVIGDLEGWGYSNSDMRAYLGALSILQDYYPERLGKLFIIHAPYIFMAIWKIVYPFIDKNTKKKIVLVEKTKLRSTLLEEIDESQLPQIYGGKLPLVPIQDS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0009 228 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 62 224 IPR001251 -
Vvi17g0009 228 SMART sec14_4 67 221 IPR001251 -
Vvi17g0009 228 CDD SEC14 75 219 IPR001251 -
Vvi17g0009 228 PANTHER OS03G0850700 PROTEIN 15 66 - -
Vvi17g0009 228 Gene3D - 16 225 IPR036865 -
Vvi17g0009 228 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g0009 228 Pfam CRAL/TRIO domain 72 218 IPR001251 -
Vvi17g0009 228 SUPERFAMILY CRAL/TRIO domain 65 221 IPR036865 -
Vvi17g0009 228 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0009 Vvi-Chr17 52851 54624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0009 127 214 Acyl Lipid Metabolism Gene Families AT5G47730 31.461 2.33e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0009 - - vvi:100247551 435.261